View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_66 (Length: 240)
Name: NF11537_high_66
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 25590564 - 25590340
Alignment:
| Q |
1 |
accttaccaatgctctctttcaccgttacttttcttttacttgcaaaaaatgcatctctaggtgtcaagctcatgattatatcatcaaagggtgcatgat |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25590564 |
accttaccaatgctctctttcaccattacttttcttttacttgcaaagaatgcatctctaggtgtcaagctcatgattatatcatcaaagggtgcatgat |
25590465 |
T |
|
| Q |
101 |
cagtaagcatattgtctttactatgctgaatggaagaatatactgcagctagatgctttgctcccgataaaagcctttggacatggtctctacaagttcc |
200 |
Q |
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||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25590464 |
cagtaagtactttgtctttacgttgctgaatggaagaatatactgcagctagatgctttgctcccaataaaagcctttggacatggtctctacaagttcc |
25590365 |
T |
|
| Q |
201 |
aagattaagtgcataagtgatagat |
225 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
25590364 |
aagattaagtacataagtgatagat |
25590340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 25600216 - 25599992
Alignment:
| Q |
1 |
accttaccaatgctctctttcaccgttacttttcttttacttgcaaaaaatgcatctctaggtgtcaagctcatgattatatcatcaaagggtgcatgat |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25600216 |
accttaccaatgctctctttcaccattacttttcttttacttgcaaagaatgcatctctaggtgtcaagctcatgattatatcatcaaagggtgcatgat |
25600117 |
T |
|
| Q |
101 |
cagtaagcatattgtctttactatgctgaatggaagaatatactgcagctagatgctttgctcccgataaaagcctttggacatggtctctacaagttcc |
200 |
Q |
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||||||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25600116 |
cagtaagtactttgtctttacgttgctgaatggaagaatatactgcagctagatactttgctcccgataaaagcctttggacatggtctctacaagttcc |
25600017 |
T |
|
| Q |
201 |
aagattaagtgcataagtgatagat |
225 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
25600016 |
aagattaagtacataagtgatagat |
25599992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 25585681 - 25585457
Alignment:
| Q |
1 |
accttaccaatgctctctttcaccgttacttttcttttacttgcaaaaaatgcatctctaggtgtcaagctcatgattatatcatcaaagggtgcatgat |
100 |
Q |
| |
|
||||||||||||||||| || | ||||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||| || | |
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| T |
25585681 |
accttaccaatgctctcctttatcgttacttttcttttgcttgcaaaaaatgcatctctgggggtcaagcttgtgattatatcatcaaagggtgtgtgtt |
25585582 |
T |
|
| Q |
101 |
cagtaagcatattgtctttactatgctgaatggaagaatatactgcagctagatgctttgctcccgataaaagcctttggacatggtctctacaagttcc |
200 |
Q |
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||||||| | | ||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |
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| T |
25585581 |
cagtaagtacttcgtctttaggttgctgaatggaaggatatgttgcagctagatgctttattcccgataaaagcctttggacatggtccctacaggttcc |
25585482 |
T |
|
| Q |
201 |
aagattaagtgcataagtgatagat |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
25585481 |
aagattaagtgcataagtgatagat |
25585457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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