View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_69 (Length: 238)
Name: NF11537_high_69
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 36313118 - 36313325
Alignment:
| Q |
13 |
cagagacatttgcttcatcagttaaaacctgtttgccattatactccaatacaagctctggctgtggaagcaaatggttttgcagcctcataaccaaagg |
112 |
Q |
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| T |
36313118 |
cagagacatttgcttcatcagttaaaacctgtttgccattatactccaatacaagctctggctgtggaagcaaatggttttgcagcctcataaccaaagg |
36313217 |
T |
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| Q |
113 |
tacccttgtacaaattccttgtccacgtggcaagctgataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatg |
212 |
Q |
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| T |
36313218 |
tacccttgtacaaattccttgtccacgtggcaagctgataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatg |
36313317 |
T |
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| Q |
213 |
gttggaag |
220 |
Q |
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|||||||| |
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| T |
36313318 |
gttggaag |
36313325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 36290748 - 36290842
Alignment:
| Q |
126 |
attccttgtccacgtggcaagctgataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaag |
220 |
Q |
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| T |
36290748 |
attccttgtccacgtggcaagctgataccagctaaagattcaaggacactggactttcctgaagattgatctccaacaacaacaattgttggaag |
36290842 |
T |
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