View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_70 (Length: 238)
Name: NF11537_high_70
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_70 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 228725 - 228943
Alignment:
| Q |
17 |
catatgattttctatagttaataatcatatttaccattacaaagtgtgagtacgatcttcctttcttctcaaactttatttctaattttatat-taagaa |
115 |
Q |
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| T |
228725 |
catatgattttctatagttaataatcatatttaccattacaaagtgtgagtacgatcttcctttcttctcaaactttttttctaattttatatataaaaa |
228824 |
T |
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| Q |
116 |
aaaccatttcaagcactttaatttttaatttttgttaaaaatcataagcatgtcaggtgatgggttggactattcaattgcctattgagaggttcttctc |
215 |
Q |
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| T |
228825 |
aaaccatttcaagcactttaatttttaatttttgttaaaaatcataagcatgtcaggtgatg----ggactattcaattgcctattgagaggttcttctc |
228920 |
T |
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| Q |
216 |
tcaactagtgtgtgtgcacgtcc |
238 |
Q |
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|||||||||||||| |||||||| |
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| T |
228921 |
tcaactagtgtgtgagcacgtcc |
228943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 238198 - 237977
Alignment:
| Q |
17 |
catatgattttctatagttaataatcatatttaccattacaaagtgtgagtacgatcttcctttcttctcaaactttattt---ctaattttatat-taa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
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| T |
238198 |
catatgattttctatagttaataatcatatttaccattacaaagtgtgagtacgatcttcctttcttctcaaactttattttaattatttttatatatat |
238099 |
T |
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| Q |
113 |
gaaaaac-catttcaagcactttaatttttaatttttgttaaaaatcataagcatgtcaggtgatgggttggactattcaat----tgcctattgagagg |
207 |
Q |
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| T |
238098 |
aaaaaactcattttaagcactttgatttttaatttttgttaaaaatcataagtatgtccggtgatggattagactattcaattgcatgcatgttgaga-g |
238000 |
T |
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| Q |
208 |
ttcttctctcaactagtgtgtgt |
230 |
Q |
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|||||||||| |||||||||||| |
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| T |
237999 |
ttcttctctctactagtgtgtgt |
237977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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