View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11537_high_72 (Length: 236)
Name: NF11537_high_72
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_72 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0050 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 8131 - 8180
Alignment:
| Q |
176 |
gtacataactaatgacagccgatttagaaataaaaatttcttccactcat |
225 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
8131 |
gtacataactaatgacaaccaatttagaaataaaaatttcttccactcat |
8180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 29500350 - 29500416
Alignment:
| Q |
28 |
gattattctacatctcatttccacttattttaaaatatattactgatattacttccatgtttatttt |
94 |
Q |
| |
|
|||||||||| |||||||||||| |||| | |||||| |||||||| || ||||||||||||||||| |
|
|
| T |
29500350 |
gattattctatatctcatttccatttatgtgaaaataaattactgacataacttccatgtttatttt |
29500416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 24779252 - 24779190
Alignment:
| Q |
45 |
tttccacttattttaaaatatattactgatattacttccatgttta-ttttcgttatttattt |
106 |
Q |
| |
|
|||||| ||||||||||||| | || ||| |||||||||||||||| |||||||||| ||||| |
|
|
| T |
24779252 |
tttccatttattttaaaataaactattgaaattacttccatgtttatttttcgttatatattt |
24779190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University