View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_9 (Length: 593)
Name: NF11537_high_9
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 99 - 433
Target Start/End: Original strand, 21623778 - 21624113
Alignment:
| Q |
99 |
ggtacaatcaggggaccatattaattaaagtagaaaacaaacacacacgtctgtgttatgaattatgtgtatcaattcttccctcgtgtacaatttgtaa |
198 |
Q |
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| T |
21623778 |
ggtacaatcaggggaccatattaattaaagtagaaaacaaacacacacgtctgtgttatgaattatgtgtatcaattcttccctcgtgtacaatttgtaa |
21623877 |
T |
|
| Q |
199 |
ggagtcatcatcgttattgctcatcatgtaatcatgcttctacatttctctatatataggtgttgtgcatacaaattgtgaagg-ttggaattgatctga |
297 |
Q |
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| T |
21623878 |
ggagtcatcatcgctattgctcatcatgtaatcatgcttctacatttctctatatataggtgttgtgcatacaaattgtgaaggtttggaattgatctga |
21623977 |
T |
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| Q |
298 |
aataaagagatggaggaagaaagtgagatgaaagaatcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaag |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21623978 |
aataaagagatggaggaagaaagtgagatgaaagaatcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaag |
21624077 |
T |
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| Q |
398 |
atgctgctattgagcttggaaatgagttggtaatgc |
433 |
Q |
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| T |
21624078 |
atgctgctattgagcttggaaatgagttggtaatgc |
21624113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 476 - 585
Target Start/End: Original strand, 21624142 - 21624251
Alignment:
| Q |
476 |
tttctttcttaaaatttagacggggtaaaactcaaccctacaaaatctgtttgtaatataatgatgtctctcaattaaaatcgcatgcatgtttaaattg |
575 |
Q |
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| T |
21624142 |
tttctttcttaaaatttagaccgggtaaaactcaaccctacaaaatctgtttgtaatataatgatgtctctcaattaaaatcgcacgcatgtttaaattg |
21624241 |
T |
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| Q |
576 |
tatttcatct |
585 |
Q |
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|||||||||| |
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| T |
21624242 |
tatttcatct |
21624251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 21623699 - 21623741
Alignment:
| Q |
20 |
ggtgagaccaaaccacacaatcatctttacataggaccacggg |
62 |
Q |
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| T |
21623699 |
ggtgagaccaaaccacacaatcatctttacataggaccacggg |
21623741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 333 - 431
Target Start/End: Complemental strand, 40466228 - 40466130
Alignment:
| Q |
333 |
atcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggtaat |
431 |
Q |
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||||||||||||||| |||||||| |||||||||||||| ||||||||||| | ||||||||| |||||||||||||| |||||||| || |||||||| |
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| T |
40466228 |
atcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaagaattggtaat |
40466130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 334 - 429
Target Start/End: Complemental strand, 28272022 - 28271927
Alignment:
| Q |
334 |
tcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggta |
429 |
Q |
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|||||||| |||||| ||||||| |||||||| ||||||||||| || || ||||| ||| |||||||||| ||||| ||||||||||| |||||| |
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| T |
28272022 |
tcaaagttcaagagggtttgtgtcttttgtggaagtagtcctggcaagaaaagtagttatcaagatgctgccattgaacttggaaatgaattggta |
28271927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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