View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_low_10 (Length: 580)

Name: NF11537_low_10
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_low_10
NF11537_low_10
[»] chr7 (3 HSPs)
chr7 (268-557)||(17353296-17353584)
chr7 (190-260)||(17353243-17353313)
chr7 (214-277)||(40320768-40320832)
[»] chr6 (3 HSPs)
chr6 (278-557)||(20583408-20583686)
chr6 (216-339)||(6627375-6627502)
chr6 (190-225)||(20583370-20583405)
[»] chr4 (1 HSPs)
chr4 (506-564)||(18666377-18666435)
[»] chr5 (2 HSPs)
chr5 (214-277)||(9071595-9071659)
chr5 (216-277)||(28222988-28223050)
[»] chr2 (1 HSPs)
chr2 (463-517)||(38226438-38226492)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 268 - 557
Target Start/End: Original strand, 17353296 - 17353584
Alignment:
Q  268 atatctaacacaaaaacacccagaatcttcaatattcataaaatcatcaattccaaatatctaacacacccagaatcttcaatcttcattaatagaatca 367  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||    
T  17353296 atatctaactcaaaaacacccagaatcttcaatattcataaaatcatcaattccagatatctaacacacccagaatcttcaatcttcattaattaaatca 17353395  T
Q  368 tcaattcaaataggaaaaacaagcaaaaacaaggaacaaacacgttcaagcaaaacctaaattcgtttaccccaaaatcattaatcccaaattcaagttc 467  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17353396 tcaattcaaatag-aaaaacaagcaaaaacaaggaccaaacacgttaaagcaaaacctaaattcgtttaccccaaaatcattaaacccaaattcaagttc 17353494  T
Q  468 ggtcagattatgtgggaattcgaaggatgatgcagtggttgtggtggtggatgagaagcgttttgcggttgatttggggtttttggtgac 557  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  17353495 ggttagattatgtgggaattcgaaggatgatgcagtggttatggtggtggatgagaagcgttttgcggttgattagggatttttggtgac 17353584  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 17353243 - 17353313
Alignment:
Q  190 agcttacataatcattttttatcatcatcaattcaagcaaaacccataaatcaatatctaacacaaaaaca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17353243 agcttacataatcattttttatcatcatcaattcaagcaaaacccataaatcaatatctaactcaaaaaca 17353313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 40320768 - 40320832
Alignment:
Q  214 tcatcaattcaagcaaaacccataaatca-atatctaacacaaaaacattttaagatatctaaca 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||| ||  ||||||||||||    
T  40320768 tcatcaattcaagcaaaactcataaatcagatatctaacacaaaaacaattccagatatctaaca 40320832  T

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Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 278 - 557
Target Start/End: Original strand, 20583408 - 20583686
Alignment:
Q  278 caaaaacacccagaatcttcaatattcataaaatcatcaattccaaatatctaacacacccagaatcttcaatcttcattaatagaatcatcaattcaaa 377  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||  |||||||||||||||    
T  20583408 caaaaacacccacaatcttcaatattcataaaatcatcaattccagatatctaacacacacagaatcttcaatcttcattaattaaatcatcaattcaaa 20583507  T
Q  378 taggaaaaacaagcaaaaacaaggaacaaacacgttcaagcaaaacctaaattcgtttaccccaaaatcattaatcccaaattcaagttcggtcagatta 477  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  20583508 tag-aaaaacaagcaaaaacaaggaccaaacacgttcaagcaaaacctaaattcgtttaccccaaaatcattaaacccaaattcaagttcggttagatta 20583606  T
Q  478 tgtgggaattcgaaggatgatgcagtggttgtggtggtggatgagaagcgttttgcggttgatttggggtttttggtgac 557  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20583607 tgtgggaattcgaaggatgatgcaatggttgtggtggtggatgagaagcgttttgcggttgatttgggatttttggtgac 20583686  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 6627375 - 6627502
Alignment:
Q  216 atcaattcaagcaaaacccataaatcaa-tatctaa----cacaaaaacattttaagatatctaacacaaaaacacccagaatcttcaatattcataaaa 310  Q
    ||||||||||||||||| |||||||||  |||||||    | |||||||| ||  |||||||||||||||||||||| |||||||||||| |||||||||    
T  6627375 atcaattcaagcaaaactcataaatcaggtatctaattaacgcaaaaacaattctagatatctaacacaaaaacacctagaatcttcaatcttcataaaa 6627474  T
Q  311 tcatcaattccaaatatctaacacaccca 339  Q
    ||||||||| |||| |||||||| |||||    
T  6627475 tcatcaatt-caaaaatctaacaaaccca 6627502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 20583370 - 20583405
Alignment:
Q  190 agcttacataatcattttttatcatcatcaattcaa 225  Q
    ||||||||||||||||||||||||||||||||||||    
T  20583370 agcttacataatcattttttatcatcatcaattcaa 20583405  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 506 - 564
Target Start/End: Original strand, 18666377 - 18666435
Alignment:
Q  506 ttgtggtggtggatgagaagcgttttgcggttgatttggggtttttggtgacagttttg 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18666377 ttgtggtggtggatgagaagcgttttgcggttgatttggggtttttggtgacagttttg 18666435  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 9071659 - 9071595
Alignment:
Q  214 tcatcaattcaagcaaaacccataaatca-atatctaacacaaaaacattttaagatatctaaca 277  Q
    ||||||||||||||||||| | ||||||| |||||||||||||||||| ||| ||||||||||||    
T  9071659 tcatcaattcaagcaaaactcgtaaatcagatatctaacacaaaaacaatttcagatatctaaca 9071595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 28222988 - 28223050
Alignment:
Q  216 atcaattcaagcaaaacccataaatca-atatctaacacaaaaacattttaagatatctaaca 277  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||||| ||  ||||||||||||    
T  28222988 atcaattcaagcaaaactcataaatcagatatctagtacaaaaacaattccagatatctaaca 28223050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 517
Target Start/End: Complemental strand, 38226492 - 38226438
Alignment:
Q  463 agttcggtcagattatgtgggaattcgaaggatgatgcagtggttgtggtggtgg 517  Q
    |||||||||||||| ||||| |||||| |||||||| | |||||||| |||||||    
T  38226492 agttcggtcagattctgtggaaattcggaggatgatacggtggttgttgtggtgg 38226438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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