View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_low_14 (Length: 499)

Name: NF11537_low_14
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_low_14
NF11537_low_14
[»] chr2 (6 HSPs)
chr2 (1-361)||(34468388-34468745)
chr2 (120-357)||(18556301-18556538)
chr2 (418-483)||(34468275-34468340)
chr2 (418-483)||(18556184-18556249)
chr2 (418-463)||(26404883-26404928)
chr2 (250-339)||(45468410-45468499)
[»] chr6 (10 HSPs)
chr6 (120-360)||(20209873-20210113)
chr6 (120-360)||(22103896-22104136)
chr6 (418-483)||(20210162-20210227)
chr6 (418-483)||(22104185-22104250)
chr6 (250-339)||(4103336-4103425)
chr6 (418-464)||(14782127-14782173)
chr6 (424-462)||(29361546-29361584)
chr6 (418-464)||(31848193-31848239)
chr6 (250-330)||(5195283-5195363)
chr6 (424-464)||(5195448-5195488)
[»] chr1 (8 HSPs)
chr1 (130-355)||(1870095-1870320)
chr1 (226-353)||(16632379-16632506)
chr1 (231-353)||(34504944-34505066)
chr1 (139-353)||(24308520-24308733)
chr1 (201-353)||(6135261-6135413)
chr1 (418-483)||(1870374-1870439)
chr1 (418-483)||(12527064-12527129)
chr1 (418-474)||(16632562-16632618)
[»] chr4 (7 HSPs)
chr4 (146-328)||(30036252-30036434)
chr4 (418-464)||(37014055-37014101)
chr4 (418-477)||(30036515-30036571)
chr4 (244-313)||(36826071-36826140)
chr4 (250-330)||(2633021-2633101)
chr4 (418-458)||(9013525-9013565)
chr4 (424-464)||(22322556-22322596)
[»] chr7 (5 HSPs)
chr7 (138-277)||(13781077-13781216)
chr7 (418-466)||(13780929-13780977)
chr7 (418-463)||(43656010-43656055)
chr7 (418-454)||(7567105-7567141)
chr7 (424-464)||(47809314-47809354)
[»] chr5 (3 HSPs)
chr5 (418-464)||(23257054-23257100)
chr5 (250-338)||(9194797-9194885)
chr5 (418-462)||(24251182-24251226)
[»] scaffold0074 (2 HSPs)
scaffold0074 (250-339)||(36301-36390)
scaffold0074 (418-469)||(36180-36231)
[»] chr3 (1 HSPs)
chr3 (418-463)||(19667625-19667670)
[»] scaffold0334 (1 HSPs)
scaffold0334 (246-341)||(2777-2873)
[»] chr8 (2 HSPs)
chr8 (418-464)||(15353240-15353286)
chr8 (427-464)||(15172707-15172744)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 34468745 - 34468388
Alignment:
Q  1 tttgtgtgcgaccacgacctaggatggggttgccgcaacttcaattgcaacttctccacaccatcgcgaaccaaaacgaattggatttgtgaatggaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||||||||||| |    
T  34468745 tttgtgtgcgaccacgacctaggatggggttgccgcaacttcaattgtaacttctccataccatcgagaaccaaaacaaattggatttgtgaatggaaat 34468646  T
Q  101 gaaaactaattctaaataattttcggcaggtttggctcttaatatttcattggcttagaatttcatttgtttgttcaggtcatatcaaagatcattacac 200  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34468645 gaaaaataattctgaataattttcggcaggtttggctcttaata---cattggcttagaatttcatttgtttgttcagggcatatcaaagatcattacac 34468549  T
Q  201 tcaattcactaagttggcgggcttaccgcaagcttcatactcttacttaaaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaat 300  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  34468548 tcaattcactaagttggcgggcttgccgcaagcttcatactcttacttaaaggttatatggcttgcttctatttgggtaatatggaaggatagaaacaat 34468449  T
Q  301 tgtatcttcaaaagtacggtaatcgatcctcataatattttggacaagttgaaacggtctg 361  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||  ||||| ||||||    
T  34468448 tgtatcttcaaaagtacagtaatcgatcctcataatattttggacaaagtgaaatggtctg 34468388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 120 - 357
Target Start/End: Complemental strand, 18556538 - 18556301
Alignment:
Q  120 ttttcggcaggtttggctcttaatatttcattggcttagaatttcatttgtttgttcaggtcatatcaaagatcattacactcaattcactaagttggcg 219  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||| ||||||||||||||||| ||  |||| ||| | ||||||    
T  18556538 ttttcggcaggtttggctcctaatatttcattggcttggaatttcatttgtttgtctagggcatatcaaagatcattatacgtaatttactcatttggcg 18556439  T
Q  220 ggcttaccgcaagcttcatactcttacttaaaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacgg 319  Q
     |||| | || ||| | ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || ||    
T  18556438 agcttgctgcgagcattatactcttacttaaaggttatctggcttgcttctatttgggtaatatggaaggatagaaacaattgtatcttcaaaaatatgg 18556339  T
Q  320 taatcgatcctcataatattttggacaagttgaaacgg 357  Q
    ||||||||||||||| |||||| |||||| ||||||||    
T  18556338 taatcgatcctcatagtattttcgacaaggtgaaacgg 18556301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 34468340 - 34468275
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaattgtgtttgttttgtttggtg 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34468340 catgactggtggagacacccacttctttgtattggtgtcatgtaattgtgtttgttttgtttggtg 34468275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 18556249 - 18556184
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaattgtgtttgttttgtttggtg 483  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  18556249 catgactggtggagactcccactactttgtattggtgtcatgtaattgtgtatgttttgtttggtg 18556184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 26404883 - 26404928
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaat 463  Q
    ||||| |||||||||||||||||||| ||||| | |||||||||||    
T  26404883 catgattggtggagacacccacttctctgtatggatgtcatgtaat 26404928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 45468499 - 45468410
Alignment:
Q  250 aaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcgatcctcataatatt 339  Q
    |||||||| |||||||||| | | ||||  |||||| |||| ||||| ||||||||||| |||| | ||||||| |||||| | ||||||    
T  45468499 aaggttatttggcttgcttgtgtatgggcaatatggaaggagagaaataattgtatcttaaaaaatgcggtaattgatccttacaatatt 45468410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 120 - 360
Target Start/End: Original strand, 20209873 - 20210113
Alignment:
Q  120 ttttcggcaggtttggctcttaatatttcattggcttagaatttcatttgtttgttcaggtcatatcaaagatcattacactcaattcactaagttggcg 219  Q
    |||||| |||||||||||  ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||||  | ||||||    
T  20209873 ttttcgacaggtttggcttctaatatttcattggcttggaatttcatttgtttgtccaggacatatcaaagatcattatactcaattcacacatttggcg 20209972  T
Q  220 ggcttaccgcaagcttcatactcttacttaaaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacgg 319  Q
    ||||| |||||||| |||||||  || ||||||||||||||||||||||||||||| || |||||| |||||||||| ||  |||||||||||| || ||    
T  20209973 ggcttgccgcaagcatcatactaatatttaaaggttatatggcttgcttctatttgtgtaatatggaaggatagaaataaccgtatcttcaaaaatatgg 20210072  T
Q  320 taatcgatcctcataatattttggacaagttgaaacggtct 360  Q
    |||||||||||| || ||| ||||||||  |||||||||||    
T  20210073 taatcgatcctcttagtatgttggacaacgtgaaacggtct 20210113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 120 - 360
Target Start/End: Original strand, 22103896 - 22104136
Alignment:
Q  120 ttttcggcaggtttggctcttaatatttcattggcttagaatttcatttgtttgttcaggtcatatcaaagatcattacactcaattcactaagttggcg 219  Q
    |||||| |||||||||||  ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||||  | ||||||    
T  22103896 ttttcgacaggtttggcttctaatatttcattggcttggaatttcatttgtttgtccaggacatatcaaagatcattatactcaattcacacatttggcg 22103995  T
Q  220 ggcttaccgcaagcttcatactcttacttaaaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacgg 319  Q
    ||||| |||||||| |||||||  || ||||||||||||||||||||||||||||| || |||||| |||||||||| ||  |||||||||||| || ||    
T  22103996 ggcttgccgcaagcatcatactaatatttaaaggttatatggcttgcttctatttgtgtaatatggaaggatagaaataaccgtatcttcaaaaatatgg 22104095  T
Q  320 taatcgatcctcataatattttggacaagttgaaacggtct 360  Q
    |||||||||||| || ||| ||||||||  |||||||||||    
T  22104096 taatcgatcctcttagtatgttggacaacgtgaaacggtct 22104136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 20210162 - 20210227
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaattgtgtttgttttgtttggtg 483  Q
    ||||| ||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||    
T  20210162 catgattggtggaaacacccacttctttgaatggatgtcatgtaattgtgtttgttttgtttggtg 20210227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 22104185 - 22104250
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaattgtgtttgttttgtttggtg 483  Q
    ||||| ||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||    
T  22104185 catgattggtggaaacacccacttctttgaatggatgtcatgtaattgtgtttgttttgtttggtg 22104250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 4103425 - 4103336
Alignment:
Q  250 aaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcgatcctcataatatt 339  Q
    ||||||||||||||||||| | |||||   || ||| |||| |||||||| ||||||||||||| | ||||||| |||||| | ||||||    
T  4103425 aaggttatatggcttgcttgtgtttggacaatttggaaggagagaaacaactgtatcttcaaaaatgcggtaattgatccttacaatatt 4103336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 464
Target Start/End: Complemental strand, 14782173 - 14782127
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaatt 464  Q
    ||||| |||||| |||||||||| |||||||| ||||||||||||||    
T  14782173 catgattggtggtgacacccactcctttgtatgggtgtcatgtaatt 14782127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 29361546 - 29361584
Alignment:
Q  424 tggtggagacacccacttctttgtattggtgtcatgtaa 462  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  29361546 tggtggagacacccactcctttgtatgggtgtcatgtaa 29361584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 464
Target Start/End: Complemental strand, 31848239 - 31848193
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaatt 464  Q
    ||||| |||||||||||| |||| |||||||| ||||||||||||||    
T  31848239 catgattggtggagacactcactcctttgtatgggtgtcatgtaatt 31848193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 5195283 - 5195363
Alignment:
Q  250 aaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcgatcct 330  Q
    |||||||| |||||||||| ||||||||  || ||| |||| || ||||| ||||||||||||| | |||| || ||||||    
T  5195283 aaggttatttggcttgcttgtatttgggcaatttggaaggagaggaacaactgtatcttcaaaaatgcggttattgatcct 5195363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 5195448 - 5195488
Alignment:
Q  424 tggtggagacacccacttctttgtattggtgtcatgtaatt 464  Q
    ||||||||| ||||||||| |||||| ||||||||||||||    
T  5195448 tggtggagatacccacttcattgtatgggtgtcatgtaatt 5195488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 355
Target Start/End: Original strand, 1870095 - 1870320
Alignment:
Q  130 gtttggctcttaatatttcattggcttagaatttcatttgtttgttcaggtcatatcaaagatcattacactcaattcactaagttggcgggcttaccgc 229  Q
    ||||||| |||| | | |||||||||| |||| |||||| | |||  ||| | ||| ||||||||||| |||| ||| ||| | ||||||||||| ||      
T  1870095 gtttggcacttagtgtgtcattggcttggaatctcatttttatgtcgaggacttattaaagatcattatactcgatttactcatttggcgggcttgccaa 1870194  T
Q  230 aagcttcatactcttacttaaaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcgatcc 329  Q
     ||||||||| ||||||||||||||||| ||||||||||||||||| |  || ||| ||||||||||||| ||| | ||||||| || || ||||| |||    
T  1870195 gagcttcatattcttacttaaaggttatttggcttgcttctatttgagcaatctggaaggatagaaacaactgtgttttcaaaaatatggcaatcggtcc 1870294  T
Q  330 tcataatattttggacaagttgaaac 355  Q
    ||||| |||||| |||||| ||||||    
T  1870295 tcatagtatttttgacaaggtgaaac 1870320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 226 - 353
Target Start/End: Original strand, 16632379 - 16632506
Alignment:
Q  226 ccgcaagcttcatactcttacttaaaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcg 325  Q
    |||| ||||||||| |||||||||||| |||| |||||||||||| ||||||  || ||| ||||| ||||||| ||| ||||||||| ||  |||||||    
T  16632379 ccgcgagcttcatattcttacttaaagattatttggcttgcttctctttgggcaatctggaaggattgaaacaactgtgtcttcaaaaatattgtaatcg 16632478  T
Q  326 atcctcataatattttggacaagttgaa 353  Q
    ||||||||| |||||| |||||| ||||    
T  16632479 atcctcatagtatttttgacaaggtgaa 16632506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 353
Target Start/End: Original strand, 34504944 - 34505066
Alignment:
Q  231 agcttcatactcttacttaaaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcgatcct 330  Q
    ||||||||||| ||| ||| ||||||| |||||||||||  | ||||| |||||| |||| |||||||||||| ||||||||| | ||||||||||||||    
T  34504944 agcttcatactattatttataggttatctggcttgcttcagtgtgggtaatatggaaggagagaaacaattgtgtcttcaaaaatgcggtaatcgatcct 34505043  T
Q  331 cataatattttggacaagttgaa 353  Q
    | ||||||| | |||||| ||||    
T  34505044 cgtaatattcttgacaaggtgaa 34505066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 24308733 - 24308520
Alignment:
Q  139 ttaatatttcattggcttagaatttcatttgtttgttcaggtcatatcaaagatcattacactcaattcactaagttggcgggcttaccgcaagcttcat 238  Q
    ||||||| |||||||||| |||| || ||||||| | | || || || ||||| | |||   |||||| ||| ||||||||||| | |||  ||||||||    
T  24308733 ttaatatgtcattggcttggaatatcttttgtttatcctgggcacattaaagaactttatcttcaatttactcagttggcgggcatgccgagagcttcat 24308634  T
Q  239 actcttacttaaaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcgatcctcataatat 338  Q
    | |||||| |||||||||| |||||||||||  ||||    || ||| |||||||||||||  || ||||||||| | | ||||||||||||||||||||    
T  24308633 attcttacctaaaggttatttggcttgcttcagtttgaaa-atttggaaggatagaaacaaccgtgtcttcaaaaatgctgtaatcgatcctcataatat 24308535  T
Q  339 tttggacaagttgaa 353  Q
    ||| |||||| ||||    
T  24308534 ttttgacaaggtgaa 24308520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 6135413 - 6135261
Alignment:
Q  201 tcaattcactaagttggcgggcttaccgcaagcttcatactcttacttaaaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaat 300  Q
    |||||| ||| ||||||||||| | |||  ||||||||| |||||| |||| ||||| ||||||||||   ||||| | || ||  |||||||||||||     
T  6135413 tcaatttactcagttggcgggcatgccgagagcttcatattcttacctaaaagttatttggcttgctttagtttggataatttgaaaggatagaaacaac 6135314  T
Q  301 tgtatcttcaaaagtacggtaatcgatcctcataatattttggacaagttgaa 353  Q
    ||| ||||||||| |   ||||||||| ||||||||||||  |||||| ||||    
T  6135313 tgtgtcttcaaaaatgtagtaatcgatgctcataatatttatgacaaggtgaa 6135261  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 1870374 - 1870439
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaattgtgtttgttttgtttggtg 483  Q
    |||||||||||| |||||||||| |||||||| |||||||||||  ||| ||||||||||| ||||    
T  1870374 catgactggtggcgacacccactactttgtatcggtgtcatgtacctgtttttgttttgttcggtg 1870439  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 12527129 - 12527064
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaattgtgtttgttttgtttggtg 483  Q
    ||||| |||| ||||||||||||||| ||||| |||||||||||||| ||||| | || |||||||    
T  12527129 catgattggtcgagacacccacttctgtgtatgggtgtcatgtaattttgtttttattatttggtg 12527064  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 16632562 - 16632618
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaattgtgtttgttt 474  Q
    |||||||||||| ||| |||||| || ||||| |||||||||||| ||| |||||||    
T  16632562 catgactggtggcgacgcccactactgtgtatgggtgtcatgtaactgtttttgttt 16632618  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 146 - 328
Target Start/End: Original strand, 30036252 - 30036434
Alignment:
Q  146 ttcattggcttagaatttcatttgtttgttcaggtcatatcaaagatcattacactcaattcactaagttggcgggcttaccgcaagcttcatactctta 245  Q
    ||||||||||| | || || ||||  ||| |||| | ||||||||| ||||| |||||||| ||| | |||| |||| | |||| ||| ||||| |||||    
T  30036252 ttcattggcttgggatctcttttgcatgtccagggcttatcaaagaccattatactcaatttactcatttggtgggcatgccgcgagcatcatattctta 30036351  T
Q  246 cttaaaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcgatc 328  Q
     ||||||||||||||| ||||||||||||||   ||  || |||||||||| || |||||||| |||| |||| |||||||||    
T  30036352 tttaaaggttatatggattgcttctatttggacaattcggaaggatagaaataactgtatctttaaaaatacgataatcgatc 30036434  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 464
Target Start/End: Complemental strand, 37014101 - 37014055
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaatt 464  Q
    ||||| ||||||||||||||||||||||||||  ||||| |||||||    
T  37014101 catgattggtggagacacccacttctttgtatgagtgtcgtgtaatt 37014055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 477
Target Start/End: Original strand, 30036515 - 30036571
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaattgtgtttgttttgt 477  Q
    |||||||| ||| |||||||||| ||||||||||||   |||||||||| ||||||||||    
T  30036515 catgactgttggtgacacccactactttgtattggt---atgtaattgtttttgttttgt 30036571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 36826140 - 36826071
Alignment:
Q  244 tacttaaaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaa 313  Q
    ||||||||  |||| |||| ||| | ||||||||  |||||| ||||||||||||| |||||||||||||    
T  36826140 tacttaaaaattatttggcgtgcgtgtatttgggcaatatggaaggatagaaacaactgtatcttcaaaa 36826071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 2633101 - 2633021
Alignment:
Q  250 aaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcgatcct 330  Q
    |||||||||||||||||||||| |||||  || ||| || | ||||||||  |  ||||||||| ||||||||| ||||||    
T  2633101 aaggttatatggcttgcttctacttgggctatttggaagaaaagaaacaaccgcgtcttcaaaaatacggtaatagatcct 2633021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 458
Target Start/End: Complemental strand, 9013565 - 9013525
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcat 458  Q
    ||||| ||||||||| |||||||||||||||| ||||||||    
T  9013565 catgattggtggagatacccacttctttgtatgggtgtcat 9013525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 22322596 - 22322556
Alignment:
Q  424 tggtggagacacccacttctttgtattggtgtcatgtaatt 464  Q
    ||||||||||||||||| |||||||| ||| ||||||||||    
T  22322596 tggtggagacacccactcctttgtatgggtatcatgtaatt 22322556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 13781216 - 13781077
Alignment:
Q  138 cttaatatttcattggcttagaatttcatttgtttgttcaggtcatatcaaagatcattacactcaattcactaagttggcgggcttaccgcaagcttca 237  Q
    |||| ||| ||| |||||| |||| |||||||| | | |||| ||||| | ||||||||||  |||||| ||| | ||||| |||||| | | | ||||     
T  13781216 cttagtatgtcagtggcttggaatctcatttgtctttccagggcatattagagatcattactttcaatttactcatttggcaggcttatcacgaacttct 13781117  T
Q  238 tactcttacttaaaggttatatggcttgcttctatttggg 277  Q
    || || |||||||||||||| |||||||||||| ||||||    
T  13781116 tattcctacttaaaggttatttggcttgcttctgtttggg 13781077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 13780977 - 13780929
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaattgt 466  Q
    |||||||||||| || | ||||| |||||||||||||||||||||||||    
T  13780977 catgactggtggtgatatccactactttgtattggtgtcatgtaattgt 13780929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 43656010 - 43656055
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaat 463  Q
    ||||| ||||||||||| ||||| |||||||| |||||||||||||    
T  43656010 catgattggtggagacatccactcctttgtatgggtgtcatgtaat 43656055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 7567141 - 7567105
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtg 454  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  7567141 catgattggtggagacacccacttctttgtataggtg 7567105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 47809314 - 47809354
Alignment:
Q  424 tggtggagacacccacttctttgtattggtgtcatgtaatt 464  Q
    ||||||||||||||| |||||||||| ||||| ||||||||    
T  47809314 tggtggagacacccatttctttgtatgggtgttatgtaatt 47809354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 23257054 - 23257100
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaatt 464  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  23257054 catgattggtggagacacccacttctgtgtatgggtgtcatgtaatt 23257100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 9194885 - 9194797
Alignment:
Q  250 aaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcgatcctcataatat 338  Q
    |||||||| ||||| |||| | |||||   || ||| |||| |||||||| ||||||||||||| | ||||||| |||||||| |||||    
T  9194885 aaggttatctggctcgcttgtgtttggacaatttggaaggagagaaacaactgtatcttcaaaaatgcggtaattgatcctcacaatat 9194797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 24251182 - 24251226
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaa 462  Q
    ||||| ||||||||||||||  |||||||||| ||||||||||||    
T  24251182 catgattggtggagacaccccattctttgtatgggtgtcatgtaa 24251226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 36390 - 36301
Alignment:
Q  250 aaggttatatggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcgatcctcataatatt 339  Q
    |||||||| |||||| |||||  |||||  |||||| |||| ||||||||  || |||| |||| |||||||||||||||||||| ||||    
T  36390 aaggttatttggctttcttctggttgggcaatatggaaggaaagaaacaaccgtgtcttaaaaaatacggtaatcgatcctcatagtatt 36301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 36231 - 36180
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaattgtgtt 469  Q
    ||||| |||||||||||| |||| |||||||| |||||||||||||| ||||    
T  36231 catgattggtggagacactcactcctttgtatgggtgtcatgtaattttgtt 36180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 19667670 - 19667625
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaat 463  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||    
T  19667670 catgattggtggagacacccactcctttgtatgggtgtcatgtaat 19667625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 2777 - 2873
Alignment:
Q  246 cttaaaggttata-tggcttgcttctatttgggtgatatggtaggatagaaacaattgtatcttcaaaagtacggtaatcgatcctcataatatttt 341  Q
    ||||||||| ||| ||| |||||||||| ||||  || | | ||||||||||||| ||| ||||||||| |||||||| ||||||||| || |||||    
T  2777 cttaaaggtaataatggtttgcttctatctgggaaatttagaaggatagaaacaactgtgtcttcaaaaatacggtaaccgatcctcacaacatttt 2873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 15353240 - 15353286
Alignment:
Q  418 catgactggtggagacacccacttctttgtattggtgtcatgtaatt 464  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  15353240 catgattggtggagatacccacttctttgtatgagtgtcatgtaatt 15353286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 15172707 - 15172744
Alignment:
Q  427 tggagacacccacttctttgtattggtgtcatgtaatt 464  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  15172707 tggagacacccactcctttgtatgggtgtcatgtaatt 15172744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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