View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_15 (Length: 472)
Name: NF11537_low_15
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 42127751 - 42127290
Alignment:
| Q |
1 |
ctgaagaaactttatcagcaaaagggatttccttgccagatggttctgatcaggttggtttggttgtgattgcagaactgagggatggtaaaccagttag |
100 |
Q |
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| T |
42127751 |
ctgaagaaactttatcagcaaaagggatttccttgccagatggttctgatcaggttggtttggttgtgattgcagaactgagggatggtaaaccagttag |
42127652 |
T |
|
| Q |
101 |
caaagatgtggttgacgatattcagactcgcgtggcggaagaacatggagtcaatgttgcttctgtcaagttgatcaagcctagaaccatcagcaaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42127651 |
caaagatgtggttgacgatattcagactcgcgtggcggaagaacatggagtcaatgttgcttctgtcaagttgatcaagcctagaaccatcagcaaaaca |
42127552 |
T |
|
| Q |
201 |
acgtcaggaaaaattagaaggtttgaatgtctcaaacagtttgcagatggaacactgaatttggtgccacagcctgttttgacaaagaaaaaactggtaa |
300 |
Q |
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| T |
42127551 |
acgtcaggaaaaattagaaggtttgaatgtctcaaacagtttgcagatggaacactgaatttggtgccacaacctgttttgacaaagaaaaaactggtaa |
42127452 |
T |
|
| Q |
301 |
ggtcgttcactacaggaacatgtaaagaaggaagaacaccccgagcacagctagcgaatagcacacctataactagtccaagaattggtaacaaggaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42127451 |
ggtcgttcactacaggaacatgtaaagaaggaagaacaccccgagcacagctagcgaatagcacacctataactagtccaagaattggtaacaaggaaat |
42127352 |
T |
|
| Q |
401 |
tatggaattcttaaaaaggcttatttctgagcaggctggaatcccggtaagcaaaatctctg |
462 |
Q |
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| T |
42127351 |
tatggaattcttgaaaaggcttatttctgagcaggctggaatcccggtaagcaaaatctctg |
42127290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 24931328 - 24931103
Alignment:
| Q |
13 |
tatcagcaaaagggatttccttgccagatggttctgatcaggttggtttggttgtgattgcagaactgagggatggtaaaccagttagcaaagatgtggt |
112 |
Q |
| |
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|||||||||| || ||||| | || ||||| ||||||||||||| |||||||||||||||||| | ||||| ||||||| ||||||||||||||| | |
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| T |
24931328 |
tatcagcaaagggaatttctattcctgatggctctgatcaggttgccttggttgtgattgcagaagtaagggacggtaaacaggttagcaaagatgtgat |
24931229 |
T |
|
| Q |
113 |
tgacgatattcagactcgcgtggcggaagaacatggagtcaatgttgcttctgtcaagttgatcaagcctagaaccatcagcaaaacaacgtcaggaaaa |
212 |
Q |
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||| |||| ||| || ||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
24931228 |
tgagattattaagatgcgtgtggcagaagaacatggagttgttcttgcttctgtcaagttgatcaagcctagaaccatcagcaaaacaacatctggaaag |
24931129 |
T |
|
| Q |
213 |
attagaaggtttgaatgtctcaaaca |
238 |
Q |
| |
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|| | || ||||||||| ||||||| |
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| T |
24931128 |
atcaagagatttgaatgtatcaaaca |
24931103 |
T |
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