View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11537_low_16 (Length: 464)
Name: NF11537_low_16
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Complemental strand, 34973816 - 34973386
Alignment:
| Q |
17 |
acttcttgggaacacattgtaccctccatgcttgagattttgtatatgggtattgggaaaattttacaagaagaaagagtgtaggtatcttttgaaacat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34973816 |
acttcttgggaacacattgtaccctccatgcttgagattttgtatatgggtattgggaaaattttacaagaagaaagagtgtaggtatcttttgaaacat |
34973717 |
T |
|
| Q |
117 |
tctgaggaagttggttacaaacacttgcttaaggggaaacacactatctgtcttgtggctactgtttttgggttgattatggttcaagttacactatttt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34973716 |
tctgaggaagttggttacaaacacttgcttaagggaaaacactctatctgtcttgtggctactgtttttgggttgattatggttcaagttacactatttt |
34973617 |
T |
|
| Q |
217 |
gtgcaatggattgggattcagaaggtttgaaggggttgaatttttatcaaaaaatgattggtgtattgtttcaaattgtgaattcaagacatacgggaga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34973616 |
gtgcaatggattgggattcagaaggtttgaaggggttgaatttttatcaaaaaatgattggtgtattgtttcaaattgtgaattcaagacatacgggaga |
34973517 |
T |
|
| Q |
317 |
aactgttgtggatatctcaaatctatcacaagctatcttggtattgtttgtgctcatgatgttagtttctctcactttatctctatcttcactatccacc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34973516 |
aactgttgtggatatctcaaatctatcacaagctatcttggtattgtttgtgctcatgatgttagtttctctcactttatctctatcttcactatccatc |
34973417 |
T |
|
| Q |
417 |
aattattattactcatattattgatttaaat |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
34973416 |
aattattattactcatattattgatttaaat |
34973386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 34955405 - 34955036
Alignment:
| Q |
17 |
acttcttgggaacacattgtaccctccatgcttgagattttgtatatgggtattgggaaaattttacaagaagaaagagtgtaggtatcttttgaaacat |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||| ||||| | ||| || |||||||||||||| | ||||||||| ||||||||||| ||| |
|
|
| T |
34955405 |
acttcttgggaacacattttaccctccatgcttgagactttgcatatgtggattagggaaattttacaagaaaagagagtgtagatatcttttgaagcat |
34955306 |
T |
|
| Q |
117 |
tctgaggaagttggttacaaacacttgcttaaggggaaacacactatctgtcttgtggctactgtttttgggttgattatggttcaagttacactatttt |
216 |
Q |
| |
|
|| ||| | ||||||||||||||||| | | ||||||||||||| | ||||||||||||| || |||||||||| |||||||||| ||| | |||| |
|
|
| T |
34955305 |
tcagagaaggttggttacaaacacttattacaaaggaaacacactatttttcttgtggctactaattgtgggttgattgtggttcaagtcacattgtttt |
34955206 |
T |
|
| Q |
217 |
gtgcaatggattgggattcagaaggtttgaaggggttgaatttttatcaaaaaatgattggtgtattgtttcaaattgtgaattcaagacatacgggaga |
316 |
Q |
| |
|
||| |||||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
34955205 |
gtgtaatggattggaattcaaaaggtttgaagggattgaatttttatcaaaaattgattggtgttttgtttcaaagtgtgaattcaagacatgcgggaac |
34955106 |
T |
|
| Q |
317 |
aactgttgtggatatctcaaatctatcacaagctatcttggtattgtttgtgctcatgatgttagtttct |
386 |
Q |
| |
|
|| | ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||| |
|
|
| T |
34955105 |
aagtattgtggatatctcaattctatcacaagctatcttggtattgtttgtggtaatgatgtaagtttct |
34955036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 35034561 - 35034186
Alignment:
| Q |
17 |
acttcttgggaacacattgtaccctccatgcttgagattttgtatatgggtattgggaaaattttacaagaagaaagagtgtaggtatcttttgaaacat |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || |
|
|
| T |
35034561 |
acttcttgggaacacattataccctccatgcttgagattttgtatatgggtattggggaaattctataagaagaaagagtgtaggtatcttttgaacaat |
35034462 |
T |
|
| Q |
117 |
tctgaggaagttggttacaaacacttgcttaaggggaaacacactatctgtcttgtggctactgtttttgggttgattatggttcaagttacactatttt |
216 |
Q |
| |
|
||||| |||||||||||||||||| | | ||||||||||| | | |||| ||||||||||||||||||| ||||| |||||||||| | |||| |
|
|
| T |
35034461 |
gtagaggaggttggttacaaacacttgttacattggaaacacactctttatcttatggctactgtttttgggtttattattattcaagttactttgtttt |
35034362 |
T |
|
| Q |
217 |
gtgcaatggattgggattcagaaggtttgaaggggttgaatttttatcaaaaaatgattggtgtattgtttcaaattgtgaattcaagacatacgggaga |
316 |
Q |
| |
|
|| |||||||||| |||||||||||||||| | |||||||| |||||||||| |||||||||| || || |||| | ||||||||||| | ||||| |
|
|
| T |
35034361 |
gtctaatggattggaattcagaaggtttgaaagagttgaattattatcaaaaattgattggtgtgttattccaaagcataaattcaagacacgctggaga |
35034262 |
T |
|
| Q |
317 |
aactgttgtggatatctcaaatctatcacaagctatcttggtattgtttgtgctcatgatgttagtttctctcact |
392 |
Q |
| |
|
|||| ||||||| |||||| | |||||||||| ||||||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
35034261 |
aactattgtggacctctcaattatatcacaagcaatcttggtactatttgtcctcatgatgttagtttctctcact |
35034186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University