View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_21 (Length: 431)
Name: NF11537_low_21
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 196 - 419
Target Start/End: Original strand, 36795910 - 36796133
Alignment:
| Q |
196 |
aatttttatttatattttgggacggagtgtgtacatattttctccatcattaattaacaataattcataagaggccagcattttgtgatgtagcttatag |
295 |
Q |
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| T |
36795910 |
aatttttacttacattttaggacggagagaagacatattttctccatcattaattaacaataattcataagaggccagcattttgtgatgtagcttatag |
36796009 |
T |
|
| Q |
296 |
catcaaatcaatcgcgtggaaatatctcaccctcacaaacatcacattcctggacccactttcttccactctaaacccgcttctcttcaaatcaccacca |
395 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36796010 |
catcaaatcaatcacgtggaaatatctcaccctcacaaacatcacattcctggacccactttcttccactctaaacccgcttctcttcaaatcaccacca |
36796109 |
T |
|
| Q |
396 |
cacgcatcaaaaccatttcatctc |
419 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
36796110 |
cacgcatcaaaaccatttcatctc |
36796133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 36795744 - 36795854
Alignment:
| Q |
71 |
gttcatctactcgtatacaataatgacaaacagatgtcattccacaacatgaattaaatcgcatcatcacataaacttagctcagttgataaagataatg |
170 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| | ||||||| |||||||||||||||||||||||| ||| |
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| T |
36795744 |
gttcatctactcctatacaataatgacaaccagatgtcattccaaaacatgaattaaatcacgtcatcacgtaaacttagctcagttgataaagacaata |
36795843 |
T |
|
| Q |
171 |
tatactatata |
181 |
Q |
| |
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||||||||||| |
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| T |
36795844 |
tatactatata |
36795854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 36795709 - 36795746
Alignment:
| Q |
19 |
tattgtcatacattataccatgtgaagttatgtatgtt |
56 |
Q |
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| T |
36795709 |
tattgtcatgcattataccatgtgaagttatgtatgtt |
36795746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 33849650 - 33849617
Alignment:
| Q |
147 |
ttagctcagttgataaagataatgtatactatat |
180 |
Q |
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||||||||||||||||||| |||||||||||||| |
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|
| T |
33849650 |
ttagctcagttgataaagacaatgtatactatat |
33849617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 11759026 - 11759064
Alignment:
| Q |
142 |
taaacttagctcagttgataaagataatgtatactatat |
180 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
11759026 |
taaacttagctcagttgataaggataatgtataatatat |
11759064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 9055463 - 9055427
Alignment:
| Q |
144 |
aacttagctcagttgataaagataatgtatactatat |
180 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||| |
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|
| T |
9055463 |
aacttagctcagttgataaaaataatgtataatatat |
9055427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 470374 - 470340
Alignment:
| Q |
146 |
cttagctcagttgataaagataatgtatactatat |
180 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
470374 |
cttagctcagttgataaagataatgtataatatat |
470340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 41244938 - 41244975
Alignment:
| Q |
142 |
taaacttagctcagttgataaagataatgtatactata |
179 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||| |
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|
| T |
41244938 |
taaatttagctcagttgataaagataatgtataatata |
41244975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 22365975 - 22366011
Alignment:
| Q |
144 |
aacttagctcagttgataaagataatgtatactatat |
180 |
Q |
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||||||| ||||||||||||||||||||||| ||||| |
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| T |
22365975 |
aacttagttcagttgataaagataatgtataatatat |
22366011 |
T |
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