View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_23 (Length: 422)
Name: NF11537_low_23
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 11 - 382
Target Start/End: Complemental strand, 42790514 - 42790138
Alignment:
| Q |
11 |
aagaagcttctttcaaagatgtatccggagaatctaattatttgttaatgattgaatccacacnnnnnnnnnnnnnnnttaattgccaatggttaaagaa |
110 |
Q |
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| T |
42790514 |
aagaagcttctttcaaagacgtatccggagaatataattatttgctaatgattgaatccacaaaaaaaaaaaaaaaaaa-aattatcaatggttaaagaa |
42790416 |
T |
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| Q |
111 |
acttggccagtatacatgcctccacgtatgagccgaattagtcgcatataactatttgctaatgattgaatccnnnnnnnnnn--tgtaattgtttataa |
208 |
Q |
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| T |
42790415 |
acttggccagtatacatgtctccacgcatgagccggattagtcgcatataactatttgctaacgattgaatccaacaaaaaaaaatgtaattgtt-ataa |
42790317 |
T |
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| Q |
209 |
cttatactaagtttttctatatatactcttaatctaacatagttctgttattgaagttatatagtgtgcatctctatctaacttttatggatacaagaac |
308 |
Q |
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| T |
42790316 |
cttatactaagtttttctatctatactcttaatctaacatagttctgttattgaagttatatagtgtgcatctctatctaacttttatggatacaagaac |
42790217 |
T |
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| Q |
309 |
aattcctt-----nnnnnnnnnntggatacaagaacaagaacattcatgcctacaacttttctcacacatgtcattaat |
382 |
Q |
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| T |
42790216 |
aattccttaaaaaaaaaaaaaaatggatacaagaacaagaacattcatgcctacaacttttctcacacatgtcattaat |
42790138 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 29933806 - 29933851
Alignment:
| Q |
111 |
acttggccagtatacatgcctccacgtatgagccgaattagtcgca |
156 |
Q |
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| T |
29933806 |
acttgaccagtgtacatgcctctacgtatgagccggattagtcgca |
29933851 |
T |
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