View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_24 (Length: 421)
Name: NF11537_low_24
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 16151506 - 16151105
Alignment:
| Q |
20 |
tttagggttttgggagtttgtgaaaaataaactacaacaatgtttgcattcatctaatatatagtgtcaaattttgtgatgttgtggttgccgttggtga |
119 |
Q |
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| T |
16151506 |
tttagggttttgggagtttgagaaaaataaactacaacaatgtttgcattcatctaatata--gtgtcaaattttgtgatgttgtggttgccgttgttga |
16151409 |
T |
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| Q |
120 |
agtgatctataaatatctttgttacttagtcaaaataaacattgtgaagttgtagacgatgcacccaattgatggcatgaaccaattccaaagattctcc |
219 |
Q |
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| T |
16151408 |
aataatctacaaatatctttgctacttagtcaaaatcaacattgtgaagttgtagacgatgcacccaattgatggcatgaaccaattccaaagattctcc |
16151309 |
T |
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| Q |
220 |
gacttccgtgga-----------gtgaccaaagtgtcatagcaaaaccc---tatagttcagcgtgacggagaatgagacgtcaatgttgcacattaggc |
305 |
Q |
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| T |
16151308 |
gacttccgtggagcaaatatgttgtgaccaaagtgtcatagc--aacccttgtatagttcagcgtgacggagaatgagacatcaatgttgcacattaggc |
16151211 |
T |
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| Q |
306 |
accctgttactggtggatgccaacgagacaactgatgttagttgtctcgtgtcagtttctagagtaggccgatcttgttgttgttttgttcacttagcat |
405 |
Q |
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| T |
16151210 |
gccctgttactggtgaatgccaacgagacaaccgatgttagttgtctcctgtcagtttctagagtaggccgatctcgttgttgttgtgttcacttagcat |
16151111 |
T |
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| Q |
406 |
cctttg |
411 |
Q |
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| T |
16151110 |
gctttg |
16151105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 13696944 - 13696857
Alignment:
| Q |
33 |
gagtttgtgaaaaataaactacaacaatgtttgcattcatctaatatatagtgtcaaattttgtgatgttgtggttgccgttggtgaagt |
122 |
Q |
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| T |
13696944 |
gagtttgtgaaaaataaattacaacaacgtttgcattcatgta--atatagtgccaaattttgtgatattgtcgttgccgttgttgaagt |
13696857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 951987 - 952026
Alignment:
| Q |
33 |
gagtttgtgaaaaataaactacaacaatgtttgcattcat |
72 |
Q |
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| T |
951987 |
gagtttgtgaaaaataagctacaacaatgtttgcattcat |
952026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 31653261 - 31653322
Alignment:
| Q |
149 |
tcaaaataaacattgtgaagttgtagacgatgcacccaattgatggcatgaaccaattccaa |
210 |
Q |
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| T |
31653261 |
tcaaaatccacattgtgaagttgtagatcatgcacttaattgatggcatgaagcaattccaa |
31653322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 7527879 - 7527917
Alignment:
| Q |
42 |
aaaaataaactacaacaatgtttgcattcatctaatata |
80 |
Q |
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||||||||| ||||||| ||||||||||||||||||||| |
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| T |
7527879 |
aaaaataaaatacaacagtgtttgcattcatctaatata |
7527917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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