View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_25 (Length: 420)
Name: NF11537_low_25
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 91 - 409
Target Start/End: Original strand, 41025351 - 41025670
Alignment:
| Q |
91 |
aaatgcgaacaaattactttctgcattgttaattcatctaaatttctatagggattgtatgtaattgtaattgtaattgtaattgatagagtgagagtac |
190 |
Q |
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| T |
41025351 |
aaatgcgaacaaattactttctgcattgttaattcatctaaatttctatagggattgtatgtaattgtaattg------------atagagtgaaagtac |
41025438 |
T |
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| Q |
191 |
ctggattgattctataacccatgttgtaactattaaaagaaagtgcataaattgatgatgcagaattgaagtg-------------taaataaataaata |
277 |
Q |
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| T |
41025439 |
ctggattgattctataacccatgttgtaactattaaaagaaagtgcataaattgatgatgcagaattgaagtggttagtgtgagtgtaaataaataaata |
41025538 |
T |
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| Q |
278 |
ttcactgggatttggattgggacagttaacaatatgacaaagacatgtaaattgtaaattatataaacaataataacaagtagttgaggaaagctggctt |
377 |
Q |
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| T |
41025539 |
ttcactgggatttggattgggacagttaacaatatgacaaagacatgtaaattgtaaattatataaacaataataacaagtagttgaggaaagttggctt |
41025638 |
T |
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| Q |
378 |
tgaactgaagccaacgtacatgagcttccttt |
409 |
Q |
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| T |
41025639 |
tgaactgaagccaacgtacatgagcttccttt |
41025670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 41025237 - 41025311
Alignment:
| Q |
19 |
aatgattatcattatatcttctaaaatcaattacatagtggccctgctgtcgggatacactgaagttaagcgaaa |
93 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41025237 |
aatgattatcatcatatcttctaaaatcaattacatagtggccctgctgtcgggatacactgaagttaagcgaaa |
41025311 |
T |
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