View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_26 (Length: 416)
Name: NF11537_low_26
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 135 - 398
Target Start/End: Complemental strand, 29107625 - 29107366
Alignment:
| Q |
135 |
tcacatcaatcaaacatagcatagcatctattaactctatttcactgtgagtgtgacaaataaaactagagagagtatctatcatatttcattagtagtt |
234 |
Q |
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| T |
29107625 |
tcacatcaatcaaacatagcatagcatctattaactctatttcactgtgagtgtgacaaataaaactagag----tatctataatatttcattagtagtt |
29107530 |
T |
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| Q |
235 |
agtgcatgattcactacaatggcttcagcttgcatcaacaacaacatctcaatgtcacctgaaacctttttcccatggggagatcctgaacctgacttcg |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29107529 |
agtgcatgattcactacaatggcttcagcttgcatcaacaacaacatctcaatgtcacctgaaacctttttcccatggggagatcctgaacctgacttcg |
29107430 |
T |
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| Q |
335 |
agttccgtcttcaagatcccgttaacatgctccccgccgatcaactcttctccgacggtaaact |
398 |
Q |
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| T |
29107429 |
agttccgtcttcaagatcccgttaacatgctccccgccgatcaactcttctccgacggtaaact |
29107366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 29107764 - 29107660
Alignment:
| Q |
13 |
gagagtagctgcaaaaactgttatatatgtgcctccctcgcccaccctcattctattctattcaattctatttcccaccgtaccccttcttcaacaacca |
112 |
Q |
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| T |
29107764 |
gagagtagctgcaaaaactgttatatatgtgcctccctcgcccaccctcattctattctattcaattctatttcccaccgta-cccttcttcaacaacca |
29107666 |
T |
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| Q |
113 |
acacaa |
118 |
Q |
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|||||| |
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| T |
29107665 |
acacaa |
29107660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 23621588 - 23621670
Alignment:
| Q |
230 |
tagttagtgcatgattcactacaatggcttca--gcttgcatcaacaacaacatctcaatgtcacctgaaacctttttcccat |
310 |
Q |
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|||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||| || ||||||| |
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| T |
23621588 |
tagttagtgcatgatttactacaatggcttcattgcctgcatcaacaacaacatgggaatgtcacctgaaactttcttcccat |
23621670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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