View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_low_29 (Length: 408)

Name: NF11537_low_29
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_low_29
NF11537_low_29
[»] chr7 (11 HSPs)
chr7 (315-369)||(29034765-29034819)
chr7 (248-313)||(1910190-1910255)
chr7 (315-368)||(5240310-5240363)
chr7 (241-314)||(29687415-29687488)
chr7 (250-314)||(7323050-7323114)
chr7 (315-370)||(7322929-7322984)
chr7 (245-314)||(8258735-8258804)
chr7 (315-368)||(40763327-40763380)
chr7 (315-371)||(22707127-22707182)
chr7 (315-369)||(36279197-36279251)
chr7 (315-372)||(30538454-30538511)
[»] chr3 (17 HSPs)
chr3 (248-318)||(44570479-44570549)
chr3 (247-314)||(10854804-10854871)
chr3 (315-372)||(1803966-1804023)
chr3 (250-314)||(12050986-12051050)
chr3 (315-367)||(31647372-31647424)
chr3 (259-314)||(8847549-8847604)
chr3 (315-369)||(36730130-36730184)
chr3 (315-369)||(41346352-41346406)
chr3 (273-318)||(35306303-35306348)
chr3 (315-372)||(44695645-44695702)
chr3 (250-318)||(31647253-31647320)
chr3 (250-314)||(32415518-32415581)
chr3 (315-369)||(29915552-29915606)
chr3 (315-369)||(29964705-29964759)
chr3 (315-369)||(48136700-48136754)
chr3 (315-372)||(51817287-51817343)
chr3 (245-285)||(20406677-20406717)
[»] chr4 (28 HSPs)
chr4 (315-372)||(26831760-26831817)
chr4 (243-314)||(47188762-47188833)
chr4 (315-370)||(34016703-34016758)
chr4 (315-369)||(26040337-26040391)
chr4 (247-314)||(34316820-34316887)
chr4 (315-369)||(35808373-35808427)
chr4 (315-369)||(41956190-41956244)
chr4 (247-313)||(45688688-45688754)
chr4 (315-369)||(55669817-55669871)
chr4 (249-314)||(41956310-41956375)
chr4 (248-318)||(45088020-45088086)
chr4 (315-368)||(54339190-54339243)
chr4 (315-371)||(2362709-2362765)
chr4 (255-315)||(20456522-20456582)
chr4 (250-314)||(50514710-50514774)
chr4 (247-314)||(2362574-2362641)
chr4 (251-314)||(23765527-23765590)
chr4 (315-370)||(27839282-27839337)
chr4 (263-314)||(55669700-55669751)
chr4 (320-370)||(19328723-19328773)
chr4 (248-314)||(26040457-26040523)
chr4 (315-369)||(31755016-31755070)
chr4 (315-369)||(34316699-34316753)
chr4 (323-369)||(51290516-51290562)
chr4 (278-318)||(20811239-20811279)
chr4 (250-314)||(26831882-26831946)
chr4 (315-367)||(31487799-31487851)
chr4 (250-314)||(54339061-54339125)
[»] chr5 (17 HSPs)
chr5 (251-314)||(39567852-39567915)
chr5 (248-314)||(16315629-16315695)
chr5 (250-314)||(35653352-35653416)
chr5 (315-369)||(1479113-1479167)
chr5 (249-314)||(8410089-8410154)
chr5 (315-365)||(3639056-3639106)
chr5 (250-314)||(12914123-12914187)
chr5 (247-318)||(27823206-27823278)
chr5 (315-373)||(4421937-4421995)
chr5 (315-369)||(5151567-5151621)
chr5 (320-370)||(13951019-13951068)
chr5 (315-369)||(37243925-37243978)
chr5 (315-368)||(10017600-10017653)
chr5 (315-348)||(27535173-27535206)
chr5 (315-368)||(28143101-28143154)
chr5 (248-313)||(34546724-34546789)
chr5 (315-368)||(39567981-39568034)
[»] chr2 (13 HSPs)
chr2 (315-384)||(6071654-6071723)
chr2 (315-375)||(1321246-1321306)
chr2 (248-314)||(2966486-2966552)
chr2 (248-314)||(6999148-6999214)
chr2 (315-369)||(33864433-33864487)
chr2 (315-369)||(765127-765181)
chr2 (324-370)||(4023353-4023399)
chr2 (315-369)||(27495201-27495255)
chr2 (315-369)||(39401512-39401566)
chr2 (251-318)||(39085885-39085952)
chr2 (273-314)||(862560-862601)
chr2 (243-315)||(34392644-34392715)
chr2 (315-371)||(35445265-35445321)
[»] chr6 (12 HSPs)
chr6 (251-314)||(7875278-7875341)
chr6 (315-370)||(26572058-26572113)
chr6 (252-314)||(26572174-26572236)
chr6 (243-306)||(7880532-7880595)
chr6 (250-312)||(10855381-10855443)
chr6 (253-314)||(16437679-16437740)
chr6 (315-367)||(10855510-10855562)
chr6 (320-371)||(8324079-8324130)
chr6 (315-368)||(16437568-16437621)
chr6 (250-314)||(19645945-19646009)
chr6 (315-371)||(29692316-29692372)
chr6 (274-314)||(32786041-32786081)
[»] chr1 (17 HSPs)
chr1 (315-369)||(41147452-41147506)
chr1 (248-314)||(49508827-49508893)
chr1 (249-314)||(27209815-27209880)
chr1 (315-371)||(40845329-40845385)
chr1 (315-370)||(2125680-2125735)
chr1 (315-370)||(27209694-27209749)
chr1 (315-369)||(29966901-29966955)
chr1 (315-369)||(34874645-34874699)
chr1 (249-314)||(22346331-22346396)
chr1 (320-369)||(47655345-47655394)
chr1 (249-313)||(7190570-7190634)
chr1 (315-370)||(28850883-28850938)
chr1 (248-314)||(4940834-4940900)
chr1 (315-369)||(7190449-7190503)
chr1 (315-369)||(33930044-33930098)
chr1 (315-373)||(44286950-44287008)
chr1 (315-372)||(43433853-43433910)
[»] chr8 (9 HSPs)
chr8 (250-314)||(4989884-4989948)
chr8 (315-369)||(19389287-19389341)
chr8 (315-368)||(45338082-45338135)
chr8 (248-314)||(3174402-3174468)
chr8 (315-369)||(4990011-4990065)
chr8 (315-369)||(6939236-6939290)
chr8 (315-369)||(21016034-21016088)
chr8 (247-281)||(26672735-26672769)
chr8 (250-314)||(6433492-6433556)
[»] scaffold0144 (1 HSPs)
scaffold0144 (245-315)||(39532-39602)


Alignment Details
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 29034765 - 29034819
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29034765 atttatatttttatccccttatccaatgcctcaaggacaatggttagcattctcc 29034819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 1910190 - 1910255
Alignment:
Q  248 aagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcatt 313  Q
    |||||||||||||| ||||||| ||||||||||| ||| ||||  |||||||||||||||| ||||    
T  1910190 aagggtcttgctaaccattgccatcagggcaatggttaaagaagtcaaaagtagcatgtttacatt 1910255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 5240363 - 5240310
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctc 368  Q
    |||| |||||||||||  |||| |||||||||||||||||||||||||||||||    
T  5240363 atttctatttttatccctttatccaatgcctcaaggacaatggttagcattctc 5240310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 29687415 - 29687488
Alignment:
Q  241 aaattataagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||| ||| |||||||||||| ||||||||||| ||||||  |||  ||| |||||||||||||||||||||||    
T  29687415 aaataatatgggtcttgctaaccattgccctcaaggcaatacttaaggaagccaaaagtagcatgtttgcattg 29687488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 7323114 - 7323050
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||||||||| ||| || |||||| ||| ||||  ||||||||||||||||||||||    
T  7323114 gggtcttgctaatcattgtcctgagagcaatggttaaagaagtcaaaagtagcatgtttgcattg 7323050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 7322984 - 7322929
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcca 370  Q
    |||| ||||||||||||||||| ||||  ||||||| |||||||||||||||||||    
T  7322984 atttctatttttatcctcttatccaatatctcaagggcaatggttagcattctcca 7322929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 8258804 - 8258735
Alignment:
Q  245 tataagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||| |||||||||||| ||||||||| || ||||||||||  |||  ||||||||| ||||||||||||    
T  8258804 tatatgggtcttgctaaccattgcccttagtgcaatgattattgaaggcaaaagtagtatgtttgcattg 8258735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 40763327 - 40763380
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctc 368  Q
    |||| ||||||||||| ||||| ||||||| ||||| |||||||||||||||||    
T  40763327 atttctatttttatccccttatccaatgccccaagggcaatggttagcattctc 40763380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 22707127 - 22707182
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaa 371  Q
    |||| |||||||||||| |||||||||||| ||| | ||||||||||||||||||||    
T  22707127 atttctatttttatcct-ttattcaatgccccaaaggcaatggttagcattctccaa 22707182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 36279197 - 36279251
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    ||||||||||||||||| |||| ||||||| ||||   |||||||||||||||||    
T  36279197 atttatatttttatcctattatccaatgccccaagagtaatggttagcattctcc 36279251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 30538511 - 30538454
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaaa 372  Q
    |||| ||||||||||| |||||  |||| | ||||||||||| |||||||||||||||    
T  30538511 atttctatttttatccccttatctaatgtcccaaggacaatgattagcattctccaaa 30538454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 44570549 - 44570479
Alignment:
Q  248 aagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattgattt 318  Q
    |||||||||||||| |||||||||| |||||||| |||  ||| |||||||||||||||||||||||||||    
T  44570549 aagggtcttgctaaccattgccctctgggcaatggttaaggaagccaaaagtagcatgtttgcattgattt 44570479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 10854804 - 10854871
Alignment:
Q  247 taagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||||||||| ||||||||||  | |||||||||  ||| |||||||||||||||||||||||    
T  10854804 taagggtcttgctaaccattgccctcgtgacaatgattaaggaagccaaaagtagcatgtttgcattg 10854871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 1803966 - 1804023
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaaa 372  Q
    |||| ||||||||||| ||||| ||||||| ||||||||||| |||||||||||||||    
T  1803966 atttctatttttatccccttatccaatgccccaaggacaatgattagcattctccaaa 1804023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 12050986 - 12051050
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||||||  ||| |||||||||||||| |||  ||| |||||||||||||||||||||||    
T  12050986 gggtcttgctaactattaccctcagggcaatggttaaggaagccaaaagtagcatgtttgcattg 12051050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 31647372 - 31647424
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattct 367  Q
    |||||||||||||||| ||||||||||| |  |||||||||||||||||||||    
T  31647372 atttatatttttatccccttattcaatgtccgaaggacaatggttagcattct 31647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 8847604 - 8847549
Alignment:
Q  259 taatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||||||||| ||||||| |||  ||||||||||||||||||||| |||||    
T  8847604 taatcattgccctcatggcaatggttaaggaaaccaaaagtagcatgtttacattg 8847549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 36730184 - 36730130
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||||||||||||||| ||||| |||||||  |||| ||||||||||||||||||    
T  36730184 atttatatttttatccccttatccaatgccataagggcaatggttagcattctcc 36730130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 41346352 - 41346406
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||||||| ||||||||||||||| ||||||||    
T  41346352 atttctatttttatccccttatccaatgccccaaggacaatggttaacattctcc 41346406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 35306303 - 35306348
Alignment:
Q  273 agggcaatgattacagaaaccaaaagtagcatgtttgcattgattt 318  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||    
T  35306303 agggcaatgcttaaggaaaccaaaagtagcatgtttgcattgattt 35306348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 44695702 - 44695645
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaaa 372  Q
    |||||||||||||||| ||||| ||||| | ||| ||||||| |||||||||||||||    
T  44695702 atttatatttttatccccttatccaatgtcccaatgacaatgattagcattctccaaa 44695645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 31647253 - 31647320
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattgattt 318  Q
    |||||||||||| ||||| | |||| |||||| |||  ||| |||||||||||||||||||||||||||    
T  31647253 gggtcttgctaaccattgtc-tcagagcaatggttaaggaagccaaaagtagcatgtttgcattgattt 31647320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 32415518 - 32415581
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||||||  |||||||||||| ||||| |||  ||||||||||||| |||||||||||||    
T  32415518 gggtcttgctaactattgccctcagg-caatggttaaggaaaccaaaagtaacatgtttgcattg 32415581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 29915606 - 29915552
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||| ||| ||||| ||||||||||||||||||    
T  29915606 atttttatttttatccccttatccaacgccccaagggcaatggttagcattctcc 29915552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 29964759 - 29964705
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||| ||| ||||| ||||||||||||||||||    
T  29964759 atttttatttttatccccttatccaacgccccaagggcaatggttagcattctcc 29964705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 48136754 - 48136700
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||| | ||||| |||| || ||||||||||||||||||||||||    
T  48136754 atttctatttttattcccttatccaataccccaaggacaatggttagcattctcc 48136700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 51817343 - 51817287
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaaa 372  Q
    |||| |||||||||||||||||||||||||  ||||| |||| |||||||| ||||||    
T  51817343 atttttatttttatcctcttattcaatgcccaaagga-aatgattagcattatccaaa 51817287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 20406717 - 20406677
Alignment:
Q  245 tataagggtcttgctaatcattgccctcagggcaatgatta 285  Q
    |||||||||||||||||||| |||||| || ||||||||||    
T  20406717 tataagggtcttgctaatcagtgccctaagagcaatgatta 20406677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 26831817 - 26831760
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaaa 372  Q
    |||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  26831817 atttctatttttatcctcttattcaatgccccaaggacaattgttagcattctccaaa 26831760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 47188833 - 47188762
Alignment:
Q  243 attataagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||| ||||||||||||| ||||||| ||||||||||| |||  ||| |||||||||||||||||||||||    
T  47188833 attattagggtcttgctaaccattgccatcagggcaatggttaaggaagccaaaagtagcatgtttgcattg 47188762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 34016703 - 34016758
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcca 370  Q
    |||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||    
T  34016703 atttctatttttatccccttatccaatgtctcaaggacaatggttagcattctcca 34016758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 26040391 - 26040337
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  26040391 atttctatttttatccccttatccaatgccccaaggacaatggttagcattctcc 26040337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 34316887 - 34316820
Alignment:
Q  247 taagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||||||||  |||||||||| || ||||| |||  ||| |||||||||||||||||||||||    
T  34316887 taagggtcttgctagccattgccctcgggacaatggttaaggaagccaaaagtagcatgtttgcattg 34316820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 35808427 - 35808373
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  35808427 atttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 35808373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 41956244 - 41956190
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||||||||| | ||||| ||||| ||||||||||||||||||    
T  41956244 atttctatttttatcctcttatccgatgccccaagggcaatggttagcattctcc 41956190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 45688688 - 45688754
Alignment:
Q  247 taagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcatt 313  Q
    ||||||||||||||| ||||||  ||||||||||  |||  ||| ||||||||||||||||||||||    
T  45688688 taagggtcttgctaaccattgcattcagggcaatagttaaggaagccaaaagtagcatgtttgcatt 45688754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 55669817 - 55669871
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  55669817 atttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 55669871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 41956375 - 41956310
Alignment:
Q  249 agggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||| |||| |||||||||||||||| |||||| |||  |||  ||||||||||||||||||||||    
T  41956375 agggccttgttaatcattgccctcagagcaatggttaaggaaggcaaaagtagcatgtttgcattg 41956310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 45088020 - 45088086
Alignment:
Q  248 aagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattgattt 318  Q
    |||||||||||||| |||||||    |||||||| |||  |||||||||||||| ||||||||||||||||    
T  45088020 aagggtcttgctaaccattgcc----gggcaatggttaaggaaaccaaaagtagtatgtttgcattgattt 45088086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 54339190 - 54339243
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctc 368  Q
    ||||||||||||||||  |||| ||||||| ||| |||||||||||||||||||    
T  54339190 atttatatttttatccctttatccaatgccccaacgacaatggttagcattctc 54339243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 2362709 - 2362765
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaa 371  Q
    |||| ||||||||||| ||||| | ||||| ||||| ||||||||||||||||||||    
T  2362709 atttttatttttatccccttatccgatgccccaagggcaatggttagcattctccaa 2362765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 20456522 - 20456582
Alignment:
Q  255 ttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattga 315  Q
    ||||||| || ||| || |||||||||||||  |||| |||||||||||||||||||||||    
T  20456522 ttgctaaccagtgctcttagggcaatgattaaggaaatcaaaagtagcatgtttgcattga 20456582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 50514774 - 50514710
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||| ||||||||  | | ||||| |||  |||||||||||||||||||||||||||    
T  50514774 gggtcttgctaaccattgccccgatgtcaatggttaaggaaaccaaaagtagcatgtttgcattg 50514710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 2362574 - 2362641
Alignment:
Q  247 taagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||| ||||| ||||||| ||||||||||| |||  |||  ||||||||| ||||||||||||    
T  2362574 taagggtctcgctaaccattgccttcagggcaatggttaaggaagtcaaaagtagtatgtttgcattg 2362641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 23765527 - 23765590
Alignment:
Q  251 ggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||||| ||||||||||||| ||||  |||  ||| | |||||||||||||||||||||    
T  23765527 ggtcttgctaaccattgccctcaggacaattgttaaggaagctaaaagtagcatgtttgcattg 23765590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 27839337 - 27839282
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcca 370  Q
    |||| ||||||||| | ||||| ||||||| ||||| |||||||||||||||||||    
T  27839337 atttctatttttattcccttatccaatgccccaagggcaatggttagcattctcca 27839282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 55669700 - 55669751
Alignment:
Q  263 cattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||| ||||||||| |||  ||| |||||||||||||||||||||||    
T  55669700 cattgccctgagggcaatggttaaggaagccaaaagtagcatgtttgcattg 55669751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 19328773 - 19328723
Alignment:
Q  320 tatttttatcctcttattcaatgcctcaaggacaatggttagcattctcca 370  Q
    ||||||||||| ||||| |||||||  ||| ||||||||||||||||||||    
T  19328773 tatttttatccccttatccaatgccctaagaacaatggttagcattctcca 19328723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 26040523 - 26040457
Alignment:
Q  248 aagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||||| ||||| |||||| ||| || |||  ||| ||||||||||||| |||||||||    
T  26040523 aagggtcttgctaaccattgtcctcagagcagtggttaaggaagccaaaagtagcatatttgcattg 26040457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 31755016 - 31755070
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||||||||||||||| ||||| |||| || ||| | ||||||||||||||||||    
T  31755016 atttatatttttatccccttatccaataccccaatggcaatggttagcattctcc 31755070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 34316753 - 34316699
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||||||||||||||  ||||| ||||||| ||||| ||||||| ||||||||||    
T  34316753 atttatatttttatctccttatccaatgccccaagggcaatggtgagcattctcc 34316699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 51290516 - 51290562
Alignment:
Q  323 ttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||||||| ||||| ||||| | ||||||||||||||||||||||||    
T  51290516 ttttatccccttatccaatgtcccaaggacaatggttagcattctcc 51290562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 20811239 - 20811279
Alignment:
Q  278 aatgattacagaaaccaaaagtagcatgtttgcattgattt 318  Q
    |||| ||| |||| |||||||||||||||||||||||||||    
T  20811239 aatggttaaagaagccaaaagtagcatgtttgcattgattt 20811279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 26831946 - 26831882
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||| |||| |||||  ||||||  ||| ||||  ||||||||||||||||||||||    
T  26831946 gggtcttgctaaccattaccctcgtggcaatcgttaaagaagtcaaaagtagcatgtttgcattg 26831882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 31487799 - 31487851
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattct 367  Q
    |||| ||||||||||| ||||||||||||  ||||| ||||||||| ||||||    
T  31487799 atttttatttttatccccttattcaatgctccaagggcaatggttaacattct 31487851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 54339061 - 54339125
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||| |||||||||||| |||||| |||  |||  |||||||||||| ||| |||||    
T  54339061 gggtcttgctaaccattgccctcagagcaatggttaaggaagtcaaaagtagcatatttacattg 54339125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 39567852 - 39567915
Alignment:
Q  251 ggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||||| |||||||||||||||||||||||  |||  ||||||||||||||||||||||    
T  39567852 ggtcttgctaaccattgccctcagggcaatgattaaggaagtcaaaagtagcatgtttgcattg 39567915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 16315695 - 16315629
Alignment:
Q  248 aagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||||| ||||||||||||||||||| |||  ||| ||||||||||| |||||||||||    
T  16315695 aagggtcttgctaaccattgccctcagggcaatggttaaggaagccaaaagtagcgtgtttgcattg 16315629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 35653416 - 35653352
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||| ||||||||||||||||||| |||  ||| ||||||||| |||||||||||||    
T  35653416 gggtcttgctaaccattgccctcagggcaatggttaaggaagccaaaagtaccatgtttgcattg 35653352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 1479167 - 1479113
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| |||||||||||||||||| | |||||||||||||||||    
T  1479167 atttctatttttatccccttattcaatgcctcaagaataatggttagcattctcc 1479113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 8410089 - 8410154
Alignment:
Q  249 agggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||| ||||||||||||||| |||||||||||  ||| |||||| ||||||||||| ||||    
T  8410089 agggtcttgttaatcattgccctcaaggcaatgattaaggaagccaaaactagcatgtttgtattg 8410154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 3639106 - 3639056
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcatt 365  Q
    |||| ||||||||||| ||||||||||| |||||| |||||||||||||||    
T  3639106 atttctatttttatccccttattcaatgtctcaagaacaatggttagcatt 3639056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 12914123 - 12914187
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||| ||||||||||||| |||| |||| |||  ||| |||||||||| ||||||||||||    
T  12914123 gggtcttgataatcattgccctgagggtaatggttaaggaagccaaaagtagtatgtttgcattg 12914187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 27823206 - 27823278
Alignment:
Q  247 taagggtcttgctaatcattgccctc-agggcaatgattacagaaaccaaaagtagcatgtttgcattgattt 318  Q
    ||||||||||||| | |||||||||| |||||||||||||  |||  ||||| ||||||||||| ||||||||    
T  27823206 taagggtcttgctgaccattgccctccagggcaatgattaaggaagtcaaaattagcatgtttgtattgattt 27823278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 4421995 - 4421937
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaaat 373  Q
    |||| ||||||||||||||||| |||||||  |||| ||||||||| ||||||| ||||    
T  4421995 atttctatttttatcctcttatccaatgccctaagggcaatggttaacattctctaaat 4421937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 5151567 - 5151621
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| |||||  |||||||||| |||||||||||||| |||||    
T  5151567 atttctatttttatccccttatcaaatgcctcaatgacaatggttagcactctcc 5151621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 13951068 - 13951019
Alignment:
Q  320 tatttttatcctcttattcaatgcctcaaggacaatggttagcattctcca 370  Q
    ||||||||||||||||| ||||| | ||| |||||||||||||||||||||    
T  13951068 tatttttatcctcttatccaatgtc-caatgacaatggttagcattctcca 13951019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 37243925 - 37243978
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| |||||||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  37243925 atttttatttttatcct-ttatccaatgcctcaagggcaatgattagcattctcc 37243978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 10017653 - 10017600
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctc 368  Q
    |||| |||||||||||||||||  |||| ||| ||||||||||||| |||||||    
T  10017653 atttctatttttatcctcttatcaaatgtctctaggacaatggttaacattctc 10017600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 27535173 - 27535206
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaa 348  Q
    ||||||||||||||||| ||||||||||||||||    
T  27535173 atttatatttttatccttttattcaatgcctcaa 27535206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 28143154 - 28143101
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctc 368  Q
    |||| ||||||||||  ||||||||||| | ||||| |||||||||||||||||    
T  28143154 atttctatttttatctccttattcaatgtcccaagggcaatggttagcattctc 28143101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 34546724 - 34546789
Alignment:
Q  248 aagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcatt 313  Q
    ||||||||||||||  |||||||| ||||||||| |||  ||| ||||||||| ||| ||||||||    
T  34546724 aagggtcttgctaactattgccctaagggcaatggttaaggaagccaaaagtatcatttttgcatt 34546789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 39567981 - 39568034
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctc 368  Q
    ||||||||||||||||  |||| ||||||| ||||| ||||||||| |||||||    
T  39567981 atttatatttttatcccattatccaatgccccaagggcaatggttatcattctc 39568034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 6071723 - 6071654
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaaattataaatataa 384  Q
    |||||||||||||||| ||||||||||  |  ||| ||||||||||||||||| ||||||||||||||||    
T  6071723 atttatatttttatccccttattcaatttcctaagaacaatggttagcattcttcaaattataaatataa 6071654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 1321246 - 1321306
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaaatta 375  Q
    |||| ||||||||||||||||| ||||||  |||||||||||||||||||||||| |||||    
T  1321246 atttctatttttatcctcttatccaatgctccaaggacaatggttagcattctcctaatta 1321306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 2966486 - 2966552
Alignment:
Q  248 aagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||||||||||| ||||||||||||| |||  ||| | ||||||||||| |||||||||    
T  2966486 aagggtcttgctaatcattgtcctcagggcaatggttaaggaagctaaaagtagcatatttgcattg 2966552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 6999148 - 6999214
Alignment:
Q  248 aagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||| ||||||| ||||| ||||||||||||| |||  ||| |||||||||||||||||||||||    
T  6999148 aagggttttgctaaccattgtcctcagggcaatggttaaggaagccaaaagtagcatgtttgcattg 6999214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 33864433 - 33864487
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  33864433 atttttatttttatcctcttattcaatgtctcaagggcaatggttaacattctcc 33864487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 765181 - 765127
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  765181 atttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 765127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 4023353 - 4023399
Alignment:
Q  324 tttatcctcttattcaatgcctcaaggacaatggttagcattctcca 370  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  4023353 tttatccccttattcaatgccccaaggacaatggttaacattctcca 4023399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 27495201 - 27495255
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||||||||||| ||||  ||||||||||||||||||    
T  27495201 atttttatttttatccccttattcaatgccccaagtgcaatggttagcattctcc 27495255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 39401566 - 39401512
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  39401566 atttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 39401512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 39085952 - 39085885
Alignment:
Q  251 ggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattgattt 318  Q
    ||||||||||| ||||| |||||| |||||| |||  |||  |||||| |||||||||||||||||||    
T  39085952 ggtcttgctaaccattgtcctcagagcaatggttaaggaagtcaaaagcagcatgtttgcattgattt 39085885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 862560 - 862601
Alignment:
Q  273 agggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||||  ||| |||||||||||||||||||||||    
T  862560 agggcaatgattaaggaagccaaaagtagcatgtttgcattg 862601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 34392715 - 34392644
Alignment:
Q  243 attataagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattga 315  Q
    |||||| |||||||||||| |  |||||||||||||||| |||  |||||||||||||| || ||| ||||||    
T  34392715 attatatgggtcttgctaaccggtgccctcagggcaatg-ttaaggaaaccaaaagtagtatatttacattga 34392644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 35445321 - 35445265
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaa 371  Q
    |||||||||||||||| |||||||||||||  ||||  ||||||||| ||| |||||    
T  35445321 atttatatttttatccccttattcaatgccctaagggtaatggttagaattttccaa 35445265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 7875341 - 7875278
Alignment:
Q  251 ggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||||| |||||||||| ||||||||||||  ||| ||||||||||||||| |||||||    
T  7875341 ggtcttgctaaccattgccctcggggcaatgattaaggaagccaaaagtagcatgtctgcattg 7875278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 26572113 - 26572058
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcca 370  Q
    |||| ||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  26572113 atttctatttttatccccttatccaatgccccaaggacaatggttagcattctcca 26572058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 26572236 - 26572174
Alignment:
Q  252 gtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||| ||||||||||||||||||| |||  |||  ||||||||||||||||||||||    
T  26572236 gtcttgctaaccattgccctcagggcaatggttaaggaagtcaaaagtagcatgtttgcattg 26572174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 7880595 - 7880532
Alignment:
Q  243 attataagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgt 306  Q
    ||||| ||||||||||||| |||| ||||| ||||||||||||  ||| |||||||||||||||    
T  7880595 attattagggtcttgctaaccattaccctcggggcaatgattaaggaagccaaaagtagcatgt 7880532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 10855381 - 10855443
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcat 312  Q
    |||||||||||| ||||| ||| ||||||||| ||| ||||| |||||||||||| |||||||    
T  10855381 gggtcttgctaaccattgtcctgagggcaatggttaaagaaatcaaaagtagcatatttgcat 10855443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 16437740 - 16437679
Alignment:
Q  253 tcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||| ||| ||||||||| ||||||||| |||  |||||||| ||||||||||||||||||    
T  16437740 tcttgttaaccattgccctgagggcaatggttaaggaaaccaacagtagcatgtttgcattg 16437679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 10855510 - 10855562
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattct 367  Q
    |||| ||||||||||| |||||  |||||| ||||||||||||||||||||||    
T  10855510 atttctatttttatccccttatcaaatgccccaaggacaatggttagcattct 10855562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 8324130 - 8324079
Alignment:
Q  320 tatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaa 371  Q
    |||||||||| |||||||||||||| |||| | ||||||||||||| |||||    
T  8324130 tatttttatcttcttattcaatgccccaagaataatggttagcattttccaa 8324079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 16437621 - 16437568
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctc 368  Q
    |||| ||||||||||| ||||| |||||||| |||  |||||||||||||||||    
T  16437621 atttctatttttatccacttatccaatgccttaagagcaatggttagcattctc 16437568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 19645945 - 19646009
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||| ||||| ||||||||||||| |||  ||||| |||||||| |  |||||||||    
T  19645945 gggtcttgctaaccattgtcctcagggcaatggttaaggaaactaaaagtagtagttttgcattg 19646009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 29692372 - 29692316
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaa 371  Q
    |||| |||||||||||  |||| ||||||| ||||| ||||| ||||||||||||||    
T  29692372 atttctatttttatccatttatccaatgccccaagggcaatgattagcattctccaa 29692316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 32786041 - 32786081
Alignment:
Q  274 gggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||| |||  |||||||||||||||||||||||||||    
T  32786041 gggcaatggttaaggaaaccaaaagtagcatgtttgcattg 32786081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 41147506 - 41147452
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  41147506 atttctatttttatccccttatccaatgccccaaggacaatggttagcattctcc 41147452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 49508893 - 49508827
Alignment:
Q  248 aagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||||||||  |||||||||| | ||||| ||| |||| |||||||||||||||||||||||    
T  49508893 aagggtcttgctaactattgccctcaagacaatggttaaagaagccaaaagtagcatgtttgcattg 49508827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 27209880 - 27209815
Alignment:
Q  249 agggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||| |||||||||| ||||||||||||    
T  27209880 agggtcttgctaaccattgccctgagggcaatggttaaggaagccaaaagtaggatgtttgcattg 27209815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 40845329 - 40845385
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaa 371  Q
    |||| ||||||||||| ||||||||||| ||||||| |||||||||||||| |||||    
T  40845329 atttctatttttatccccttattcaatgtctcaagggcaatggttagcattatccaa 40845385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 2125735 - 2125680
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcca 370  Q
    |||| ||||||||||| ||||| ||||||| |||| ||||||||||||||||||||    
T  2125735 atttctatttttatccccttatccaatgccccaagaacaatggttagcattctcca 2125680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 27209749 - 27209694
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcca 370  Q
    |||| |||||||||||  |||| ||||||| |||||||||||||||||||||||||    
T  27209749 atttctatttttatccctttatccaatgccccaaggacaatggttagcattctcca 27209694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 29966901 - 29966955
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||||||||||||||| ||||| ||||||  ||||||||||||||| ||||||||    
T  29966901 atttatatttttatccccttatccaatgctccaaggacaatggttaacattctcc 29966955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 34874645 - 34874699
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  34874645 atttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 34874699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 22346396 - 22346331
Alignment:
Q  249 agggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    ||||||||||||| ||||||| | ||| ||||| |||  ||| |||||||||||||||||||||||    
T  22346396 agggtcttgctaaccattgccttgaggacaatggttaaggaagccaaaagtagcatgtttgcattg 22346331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 47655394 - 47655345
Alignment:
Q  320 tatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    ||||||||||| ||||||||||| || |||| ||||||||||||||||||    
T  47655394 tatttttatccccttattcaatgtcttaagggcaatggttagcattctcc 47655345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 7190634 - 7190570
Alignment:
Q  249 agggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcatt 313  Q
    ||||||||||||| ||||||||| ||| ||||| |||  ||| | ||||||||||||||||||||    
T  7190634 agggtcttgctaaccattgcccttaggacaatggttaaggaagctaaaagtagcatgtttgcatt 7190570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 28850938 - 28850883
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcca 370  Q
    |||| ||||||||| |||||||  |||||| ||||| |||||||||||||||||||    
T  28850938 atttctatttttattctcttatctaatgccccaagggcaatggttagcattctcca 28850883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 4940900 - 4940834
Alignment:
Q  248 aagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||||| || || ||||||||||||  |||  |||||||||| ||||||||||| ||||    
T  4940900 aagggtcttgctaaccactgtcctcagggcaatagttaaggaaaccaaaaatagcatgtttgtattg 4940834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 7190503 - 7190449
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||||||||  ||||||| ||||| ||| ||||||||||||||    
T  7190503 atttctatttttatcctcttaaccaatgccccaagggcaaaggttagcattctcc 7190449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 33930044 - 33930098
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||||||||||||||| ||||| ||||  ||||| ||||||||||| ||||||||    
T  33930044 atttatatttttatccccttatccaatatctcaaagacaatggttaacattctcc 33930098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 44286950 - 44287008
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaaat 373  Q
    |||| |||||||||||| ||||  |||||| |||||| ||| |||||||||||||||||    
T  44286950 atttttatttttatccttttatataatgccccaaggataatagttagcattctccaaat 44287008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 43433853 - 43433910
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctccaaa 372  Q
    |||| ||||||||||| ||||| ||||||| ||||  |||| ||||||||||||||||    
T  43433853 atttctatttttatccccttatccaatgccccaagagcaatagttagcattctccaaa 43433910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 4989884 - 4989948
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||| ||||||||||| ||||||| |||  |||  ||||||||||||||||||||||    
T  4989884 gggtcttgctaaccattgccctcatggcaatggttaaggaagtcaaaagtagcatgtttgcattg 4989948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 19389341 - 19389287
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  19389341 atttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 19389287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 45338082 - 45338135
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctc 368  Q
    |||| ||||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  45338082 atttctatttttatccccttatccaatgcccaaaggacaatggttagcattctc 45338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 3174402 - 3174468
Alignment:
Q  248 aagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||||||||||| ||||||||||| |||||   |||  ||| |||||||||||||||||| ||||    
T  3174402 aagggtcttgctaaccattgccctcatggcaacagttaaggaagccaaaagtagcatgtttgtattg 3174468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 4990011 - 4990065
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||||||  ||||||||||| ||||||||||||    
T  4990011 atttctatttttatccccttatccaatgctacaaggacaatgattagcattctcc 4990065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 6939236 - 6939290
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||   |||||||||||| || |||||||||||||||||||||    
T  6939236 atttctatttttatctcattattcaatgccccatggacaatggttagcattctcc 6939290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 21016088 - 21016034
Alignment:
Q  315 atttatatttttatcctcttattcaatgcctcaaggacaatggttagcattctcc 369  Q
    |||| ||||||||||| ||||| ||| ||||||| | ||||||||||||||||||    
T  21016088 atttctatttttatccccttatccaaagcctcaaaggcaatggttagcattctcc 21016034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 26672735 - 26672769
Alignment:
Q  247 taagggtcttgctaatcattgccctcagggcaatg 281  Q
    ||||||||||||||||||||||||| |||||||||    
T  26672735 taagggtcttgctaatcattgccctgagggcaatg 26672769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 6433492 - 6433556
Alignment:
Q  250 gggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattg 314  Q
    |||||| |||||||||||||||||| |||||| |||  |||  ||||||||| || |||||||||    
T  6433492 gggtctcgctaatcattgccctcagagcaatggttaaggaagacaaaagtagtatctttgcattg 6433556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 39532 - 39602
Alignment:
Q  245 tataagggtcttgctaatcattgccctcagggcaatgattacagaaaccaaaagtagcatgtttgcattga 315  Q
    ||||||||||||||||| |   ||||||||||||||| |||  |||||||||||||| || ||| ||||||    
T  39532 tataagggtcttgctaaccgaagccctcagggcaatggttaaggaaaccaaaagtagtatatttacattga 39602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University