View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_low_30 (Length: 405)

Name: NF11537_low_30
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_low_30
NF11537_low_30
[»] chr5 (17 HSPs)
chr5 (17-197)||(17849040-17849220)
chr5 (294-393)||(17849311-17849410)
chr5 (175-261)||(16439128-16439219)
chr5 (201-258)||(2953278-2953335)
chr5 (201-239)||(12913815-12913853)
chr5 (201-263)||(16971232-16971294)
chr5 (201-243)||(19655246-19655288)
chr5 (201-258)||(291185-291242)
chr5 (201-258)||(29699455-29699512)
chr5 (203-243)||(291105-291145)
chr5 (201-261)||(1638447-1638507)
chr5 (203-243)||(19655166-19655206)
chr5 (201-247)||(30117832-30117878)
chr5 (205-243)||(31147145-31147183)
chr5 (201-242)||(3899927-3899968)
chr5 (201-258)||(13312257-13312314)
chr5 (201-233)||(1839989-1840021)
[»] chr8 (10 HSPs)
chr8 (204-262)||(39851046-39851104)
chr8 (201-258)||(5033249-5033306)
chr8 (201-250)||(10086845-10086894)
chr8 (175-243)||(35441026-35441099)
chr8 (203-243)||(22649853-22649893)
chr8 (201-263)||(5667085-5667147)
chr8 (173-233)||(4958617-4958682)
chr8 (175-243)||(5033169-5033242)
chr8 (201-242)||(35440978-35441019)
chr8 (203-243)||(2581833-2581873)
[»] scaffold0016 (1 HSPs)
scaffold0016 (201-258)||(49696-49753)
[»] chr7 (10 HSPs)
chr7 (201-258)||(27028721-27028778)
chr7 (201-263)||(41945843-41945905)
chr7 (201-258)||(4290633-4290690)
chr7 (201-258)||(11016957-11017014)
chr7 (201-258)||(42628383-42628440)
chr7 (202-243)||(45231939-45231980)
chr7 (203-243)||(11016877-11016917)
chr7 (175-243)||(34854752-34854825)
chr7 (203-243)||(41018318-41018358)
chr7 (203-243)||(48000827-48000867)
[»] chr4 (18 HSPs)
chr4 (201-258)||(6271790-6271847)
chr4 (201-260)||(5048888-5048947)
chr4 (204-258)||(26186105-26186159)
chr4 (175-243)||(23444326-23444399)
chr4 (201-258)||(44379923-44379980)
chr4 (175-243)||(51265453-51265526)
chr4 (203-243)||(3862636-3862676)
chr4 (203-243)||(3871393-3871433)
chr4 (205-261)||(19184493-19184549)
chr4 (201-256)||(30709988-30710043)
chr4 (201-243)||(23444277-23444319)
chr4 (203-237)||(30861796-30861830)
chr4 (201-243)||(47661930-47661972)
chr4 (175-243)||(6271710-6271783)
chr4 (201-258)||(35682159-35682216)
chr4 (201-258)||(42375098-42375155)
chr4 (202-243)||(44380019-44380060)
chr4 (201-233)||(25818391-25818423)
[»] chr2 (11 HSPs)
chr2 (201-262)||(32545876-32545937)
chr2 (203-243)||(6217232-6217272)
chr2 (202-261)||(1945402-1945461)
chr2 (202-261)||(14470582-14470641)
chr2 (202-261)||(24115910-24115969)
chr2 (205-243)||(45213892-45213930)
chr2 (175-243)||(16514432-16514505)
chr2 (201-258)||(16514512-16514569)
chr2 (175-243)||(29508748-29508821)
chr2 (201-258)||(38933675-38933732)
chr2 (203-243)||(9173071-9173111)
[»] chr3 (12 HSPs)
chr3 (203-243)||(41753054-41753094)
chr3 (201-258)||(30734490-30734547)
chr3 (175-243)||(33689184-33689257)
chr3 (203-243)||(1801454-1801494)
chr3 (203-243)||(41752972-41753012)
chr3 (176-249)||(30580814-30580892)
chr3 (175-243)||(43139766-43139839)
chr3 (175-243)||(47492104-47492177)
chr3 (201-233)||(20286922-20286954)
chr3 (201-233)||(47492065-47492097)
chr3 (201-249)||(50524704-50524752)
chr3 (203-243)||(51046163-51046203)
[»] chr6 (10 HSPs)
chr6 (26-81)||(1832969-1833024)
chr6 (48-83)||(1848177-1848212)
chr6 (201-243)||(12343188-12343230)
chr6 (201-243)||(17750990-17751032)
chr6 (36-81)||(1827630-1827675)
chr6 (48-81)||(1842827-1842860)
chr6 (201-258)||(7384481-7384538)
chr6 (201-258)||(24587454-24587511)
chr6 (79-119)||(1845198-1845238)
chr6 (201-261)||(17750893-17750952)
[»] chr1 (12 HSPs)
chr1 (173-243)||(37155054-37155129)
chr1 (201-243)||(28395645-28395687)
chr1 (201-258)||(29179590-29179647)
chr1 (175-243)||(29179654-29179727)
chr1 (201-266)||(31342248-31342313)
chr1 (175-243)||(44706841-44706914)
chr1 (201-258)||(48993910-48993967)
chr1 (203-243)||(46932005-46932045)
chr1 (201-243)||(32540756-32540798)
chr1 (225-258)||(31342307-31342340)
chr1 (201-262)||(36290495-36290556)
chr1 (175-243)||(48993974-48994047)
[»] scaffold0586 (1 HSPs)
scaffold0586 (175-243)||(7104-7176)
[»] scaffold0161 (1 HSPs)
scaffold0161 (203-247)||(27310-27354)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 17849040 - 17849220
Alignment:
Q  17 caattgaccaagtttctgtcaaaaatatacgaagttcaatagagagatagtaataagtcccacattgagaggataccttagctataaataggtagtggac 116  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17849040 caattgaccaagtttctgtcaaaaatatacgaagttgaatagagagatagtaataagtcccacattgagaggataccttagctataaataggcagtggac 17849139  T
Q  117 tgctcatgtatcaaatgcaaatgaaatgctttcaaaatgggaaaaccaaataaagttacttgtgaaacagatagaaacaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  17849140 tgctcatgtatcaaatgcaaatgaaatgctttcaaaatgggaaaaccaaataaaattacctgtgaaacagagagaaacaca 17849220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 294 - 393
Target Start/End: Original strand, 17849311 - 17849410
Alignment:
Q  294 ccatgttttctacagctttatattgaaaattaaataataatttttcaaacttggagatgtgggttgacatgtaaagtaggcacaatagtatatcagttca 393  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  17849311 ccatgttttctacagctttatattgaaaataaaataataatttttcaaacttggaggcgtgggttgacatgtaaagtaggcacaatagtatatcaattca 17849410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 16439219 - 16439128
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatcc 261  Q
    ||||||||| ||| ||||||||||||     ||||||||||||| ||||||||| |||| | || ||||||||||||||| |||||||||||    
T  16439219 cttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcaccaatattacccaactctatatcatccaagtgctatcc 16439128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 2953278 - 2953335
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| ||| | ||||||||    
T  2953278 gacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtgcta 2953335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 12913853 - 12913815
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaact 239  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  12913853 gacattgtgattggccaatgtcaccaatgtcactcaact 12913815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 16971232 - 16971294
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatccga 263  Q
    |||||||||||||| |||||||| ||||||||| ||||||||| ||| | |||||||| ||||    
T  16971232 gacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccga 16971294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 19655246 - 19655288
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  19655246 gacattgtgattggacaatgtcaccaatgtcactcaactctat 19655288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 291185 - 291242
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||||||||||  |||||||| ||||||||| ||||||||||||| | ||||||||    
T  291185 gacattgtgattgatcaatgtcaccaatgtcacccaactctatatcacccaagtgcta 291242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 29699455 - 29699512
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    ||||||||||||||||||||||| |||| |||| ||||||||| ||| | ||||||||    
T  29699455 gacattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtgcta 29699512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 291145 - 291105
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  291145 cattgtgattggccaatgtcaccaatgtcacccaactctat 291105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 1638507 - 1638447
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatcc 261  Q
    ||||||||||||||||||| |||  ||| |||| ||||||||||||| | |||||||||||    
T  1638507 gacattgtgattggccaatatcacaaatatcacccaactctatatcacctaagtgctatcc 1638447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 19655206 - 19655166
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  19655206 cattgtgattggccaatgtcaccaatgtcacccaactctat 19655166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 30117878 - 30117832
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatca 247  Q
    |||||||||||||| |||| ||| ||||||||| |||||||||||||    
T  30117878 gacattgtgattggtcaatatcaccaatgtcacccaactctatatca 30117832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 31147183 - 31147145
Alignment:
Q  205 ttgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  31147183 ttgtgattggccaatattatcaatgtcactcaactctat 31147145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 3899927 - 3899968
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactcta 242  Q
    |||||||||||||| |||||||| ||||||||| ||||||||    
T  3899927 gacattgtgattggtcaatgtcaccaatgtcacccaactcta 3899968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 13312314 - 13312257
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||||||||||  ||||||||||||||||||  |||||||| ||| | ||||||||    
T  13312314 gacattgtgattgatcaatgtcatcaatgtcacctaactctatgtcacctaagtgcta 13312257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 1840021 - 1839989
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcac 233  Q
    ||||||||| |||||||||||||||||||||||    
T  1840021 gacattgtggttggccaatgtcatcaatgtcac 1839989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 39851046 - 39851104
Alignment:
Q  204 attgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatccg 262  Q
    ||||||||||| |||||||| ||||||||||||||| ||| ||||| ||||||||||||    
T  39851046 attgtgattggtcaatgtcaccaatgtcactcaactttatgtcatccaagtgctatccg 39851104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 5033249 - 5033306
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||||||||||| |||||||| ||||||||| ||||||||| ||| | ||||||||    
T  5033249 gacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgcta 5033306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 10086845 - 10086894
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatca 250  Q
    |||||||||||||| |||||||| ||||||||| ||||||||| ||||||    
T  10086845 gacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcatca 10086894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 35441026 - 35441099
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     | ||||||||||||||||||||| ||||||||| |||||||||    
T  35441026 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctat 35441099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 22649893 - 22649853
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  22649893 cattgtgattagccaatgtcaccaatgtcactcaactctat 22649853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 5667147 - 5667085
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatccga 263  Q
    ||||||||||||| ||||||||| ||||||||  ||||||||| ||| | |||||||| ||||    
T  5667147 gacattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaagtgctacccga 5667085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 4958682 - 4958617
Alignment:
Q  173 tacttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcac 233  Q
    ||||||||||| ||| |||||||||| |     |||||||||||||||||||||||||||| ||||    
T  4958682 tacttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtcatcaatatcac 4958617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 5033242 - 5033169
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     | |||||||||||| |||||||| ||||||||| |||||||||    
T  5033242 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctat 5033169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 35441019 - 35440978
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactcta 242  Q
    |||||||||||||| |||||||| ||||||||| ||||||||    
T  35441019 gacattgtgattggtcaatgtcaccaatgtcacccaactcta 35440978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 2581873 - 2581833
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| ||||||||| ||| |||||    
T  2581873 cattgtgattggccaatgtcaacaatgtcacccaattctat 2581833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 49753 - 49696
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||||||||||| |||||||||||||||||| ||||||||| ||| | ||||||||    
T  49753 gacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagtgcta 49696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 27028778 - 27028721
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| ||| ||||||||||    
T  27028778 gacattgtgattgtccaatgtcaccaatgtcactcaactatatgtcaccaaagtgcta 27028721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 41945905 - 41945843
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatccga 263  Q
    |||||| |||||| | ||||||||||||||||||||| ||||| ||||| |||||||| ||||    
T  41945905 gacattatgattgactaatgtcatcaatgtcactcaattctatgtcatctaagtgctacccga 41945843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 4290633 - 4290690
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||| ||| | ||||||||    
T  4290633 gacattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaagtgcta 4290690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 11016957 - 11017014
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||||||||||| |||||||| ||||||||| ||||||||| ||| | ||||||||    
T  11016957 gacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgcta 11017014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 42628383 - 42628440
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||| ||| | ||||||||    
T  42628383 gacattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaagtgcta 42628440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 45231939 - 45231980
Alignment:
Q  202 acattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    |||||||||||||||||||||| ||||||||| |||||||||    
T  45231939 acattgtgattggccaatgtcaccaatgtcacccaactctat 45231980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 11016917 - 11016877
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  11016917 cattgtgattggccaatgtcaccaatgtcacccaactctat 11016877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 34854752 - 34854825
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| |||||||||||||| |     | ||||||||||| ||||||||| ||||||||| |||||||||    
T  34854752 cttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtcaccaatgtcacccaactctat 34854825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 41018318 - 41018358
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    |||||||||||| |||||||| ||||||||| |||||||||    
T  41018318 cattgtgattggtcaatgtcaccaatgtcacccaactctat 41018358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 48000827 - 48000867
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    |||||||||||| |||||||| ||||||||| |||||||||    
T  48000827 cattgtgattggtcaatgtcaccaatgtcacccaactctat 48000867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 6271790 - 6271847
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    ||||||||||||||||||||||| |||| |||||||||||||| ||| | ||||||||    
T  6271790 gacattgtgattggccaatgtcaccaatatcactcaactctatgtcacccaagtgcta 6271847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 5048888 - 5048947
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatc 260  Q
    |||||| |||||| ||||||||||||||||||| ||||||||| ||||| ||||| ||||    
T  5048888 gacattatgattgaccaatgtcatcaatgtcacccaactctatgtcatccaagtgttatc 5048947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 26186105 - 26186159
Alignment:
Q  204 attgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    ||||||||||||||||||||||||||| || ||||||||| ||| | ||||||||    
T  26186105 attgtgattggccaatgtcatcaatgttacccaactctatgtcacccaagtgcta 26186159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 23444326 - 23444399
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     | ||||||||||||||||||||| ||||||||| |||||||||    
T  23444326 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctat 23444399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 44379980 - 44379923
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||| | |||||||||||||  ||||||||||||||||||| ||||| ||||||||    
T  44379980 gacattataattggccaatgtcgccaatgtcactcaactctatgtcatccaagtgcta 44379923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 51265526 - 51265453
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     | ||||||||||||||||||||| ||||||||| |||||||||    
T  51265526 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctat 51265453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 3862636 - 3862676
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  3862636 cattgtgattggccaatgtcaccaatgtcacccaactctat 3862676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 3871393 - 3871433
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  3871393 cattgtgattggccaatgtcaccaatgtcacccaactctat 3871433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 19184549 - 19184493
Alignment:
Q  205 ttgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatcc 261  Q
    ||||||||| |||||||||||||||||||| |||||||| ||| | || ||||||||    
T  19184549 ttgtgattgaccaatgtcatcaatgtcacttaactctatctcacccaaatgctatcc 19184493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 30709988 - 30710043
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgc 256  Q
    ||||||||||||||||||||||| |||||||||  |||||||| ||| | ||||||    
T  30709988 gacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtgc 30710043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 23444319 - 23444277
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  23444319 gacattgtgattggtcaatgtcaccaatgtcacccaactctat 23444277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 30861830 - 30861796
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaa 237  Q
    ||||||||||||||||||||| |||||||||||||    
T  30861830 cattgtgattggccaatgtcaccaatgtcactcaa 30861796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 47661930 - 47661972
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  47661930 gacattgtgattggtcaatgtcaccaatgtcacccaactctat 47661972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 6271783 - 6271710
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     | ||||||||||||||||||||| |||| |||| |||||||||    
T  6271783 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcacccaactctat 6271710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 35682216 - 35682159
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    ||||||||||||||||||||||| |||| ||||  |||||||| ||| | ||||||||    
T  35682216 gacattgtgattggccaatgtcaccaatatcacctaactctatgtcacccaagtgcta 35682159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 42375098 - 42375155
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||||||||||  |||||||| ||||||||| ||||||||| ||| | ||||||||    
T  42375098 gacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagtgcta 42375155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 44380019 - 44380060
Alignment:
Q  202 acattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||| |||| ||| |||||||||||||||||||    
T  44380019 acattgtgattggtcaatatcaccaatgtcactcaactctat 44380060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 25818423 - 25818391
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcac 233  Q
    ||||||||||||| |||||||||||||||||||    
T  25818423 gacattgtgattgaccaatgtcatcaatgtcac 25818391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 32545876 - 32545937
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatccg 262  Q
    |||||| |||||||||||||||| |||||||||| |||||||| ||| | ||||||||||||    
T  32545876 gacattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagtgctatccg 32545937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 6217272 - 6217232
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  6217272 cattgtgattggccaatgtcaccaatgtcacccaactctat 6217232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 1945461 - 1945402
Alignment:
Q  202 acattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatcc 261  Q
    ||||||| |||| ||||| ||| ||||||||| ||||| ||||||||| |||||||||||    
T  1945461 acattgtaattgaccaatatcaccaatgtcacccaactttatatcatccaagtgctatcc 1945402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 14470641 - 14470582
Alignment:
Q  202 acattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatcc 261  Q
    ||||||||||||| |||||||| ||||||||| ||||||||| |||   |||||||||||    
T  14470641 acattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacacaagtgctatcc 14470582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 24115969 - 24115910
Alignment:
Q  202 acattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatcc 261  Q
    |||||||||||||||||||| | |||||| |||||||||||| |||   |||||||||||    
T  24115969 acattgtgattggccaatgttaccaatgtgactcaactctatctcacacaagtgctatcc 24115910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 45213892 - 45213930
Alignment:
Q  205 ttgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  45213892 ttgtgattggtcaatgtcatcaatgtcacccaactctat 45213930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 16514505 - 16514432
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     | ||| ||||||||||||||||| ||||||||| |||||||||    
T  16514505 cttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtcaccaatgtcacccaactctat 16514432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 16514512 - 16514569
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||||||||||| |||||||| |||| |||| ||||||||| ||| | ||||||||    
T  16514512 gacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagtgcta 16514569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 29508748 - 29508821
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     | ||||||||||||||||||||| |||| |||| |||||||||    
T  29508748 cttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatatcacccaactctat 29508821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 38933675 - 38933732
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||| ||||||||||| |||| ||||||||| ||||||||| ||| | ||||||||    
T  38933675 gacattatgattggccaacgtcaccaatgtcacccaactctatgtcacccaagtgcta 38933732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 9173071 - 9173111
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
T  9173071 cattgtgattggccaatatcaccaatgtcacccaactctat 9173111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 41753054 - 41753094
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  41753054 cattgtgattggccaatgtcaccaatgtcactcaactctat 41753094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 30734490 - 30734547
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    ||||||||||||||||||||||| |||||||||  |||||||| ||| | ||||||||    
T  30734490 gacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtgcta 30734547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 33689257 - 33689184
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     ||||||||||||| ||||| ||||||||||||| |||||||||    
T  33689257 cttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactctat 33689184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 1801494 - 1801454
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  1801494 cattgtgattggccaatgtcaccaatgtcacccaactctat 1801454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 41753012 - 41752972
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  41753012 cattgtgattggccaatgtcaccaatgtcacccaactctat 41752972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 30580814 - 30580892
Alignment:
Q  176 ttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatc 249  Q
    |||||||| ||||||||||||||||     ||||||||||||| |||||||||  |||||||| ||| ||||| |||||    
T  30580814 ttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaattctatgtcatc 30580892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 43139766 - 43139839
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     | |||||| |||||||||||||| ||||||||| |||||||||    
T  43139766 cttgtgaaagagagagaaacacaagcattgtggcattgttattggccaatgtcaccaatgtcacccaactctat 43139839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 47492104 - 47492177
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     ||||||||||||||||||| | | ||||||||| |||||||||    
T  47492104 cttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaatatgaccaatgtcacccaactctat 47492177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 20286954 - 20286922
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcac 233  Q
    ||||||||| |||||||||||||||||||||||    
T  20286954 gacattgtggttggccaatgtcatcaatgtcac 20286922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 47492097 - 47492065
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcac 233  Q
    ||||||||||||||||||||||| |||||||||    
T  47492097 gacattgtgattggccaatgtcaccaatgtcac 47492065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 50524752 - 50524704
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatc 249  Q
    |||||| ||||||| ||||||||||| | |||||||||||||| |||||    
T  50524752 gacattatgattggtcaatgtcatcattatcactcaactctatgtcatc 50524704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 51046163 - 51046203
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| ||||||||  |||||||||    
T  51046163 cattgtgattggccaatgtcaccaatgtcatccaactctat 51046203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 1832969 - 1833024
Alignment:
Q  26 aagtttctgtcaaaaatatacgaagttcaatagagagatagtaataagtcccacat 81  Q
    ||||||||||||||||||||| ||||| |||||||||| | || ||||||||||||    
T  1832969 aagtttctgtcaaaaatatacaaagttgaatagagagacaatattaagtcccacat 1833024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 1848177 - 1848212
Alignment:
Q  48 aagttcaatagagagatagtaataagtcccacattg 83  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1848177 aagttgaatagagagatagtaataagtcccacattg 1848212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 12343188 - 12343230
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||||| |||| |||| |||||||||    
T  12343188 gacattgtgattggccaatgtcaccaatctcacccaactctat 12343230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 17750990 - 17751032
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||| |||||||||||||||| |||| |||||||||    
T  17750990 gacattgtgatcggccaatgtcatcaatatcacccaactctat 17751032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 1827630 - 1827675
Alignment:
Q  36 caaaaatatacgaagttcaatagagagatagtaataagtcccacat 81  Q
    ||||||||||  | ||| ||||||||||||||||||||||||||||    
T  1827630 caaaaatatagtatgttgaatagagagatagtaataagtcccacat 1827675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 1842827 - 1842860
Alignment:
Q  48 aagttcaatagagagatagtaataagtcccacat 81  Q
    ||||| ||||||||||||||||||||||||||||    
T  1842827 aagttgaatagagagatagtaataagtcccacat 1842860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 7384538 - 7384481
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||||||||||| ||||||||  |||||||  ||||||||||||| | ||||||||    
T  7384538 gacattgtgattggtcaatgtcactaatgtcatccaactctatatcacctaagtgcta 7384481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 24587511 - 24587454
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    ||||||||||||| |||||||||  |||||||| ||||||||| ||| | ||||||||    
T  24587511 gacattgtgattgaccaatgtcactaatgtcacccaactctatgtcacctaagtgcta 24587454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 1845198 - 1845238
Alignment:
Q  79 cattgagaggataccttagctataaataggtagtggactgc 119  Q
    ||||| ||||| |||||| ||||||||||||||||||||||    
T  1845198 cattgggaggaaaccttacctataaataggtagtggactgc 1845238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 17750952 - 17750893
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatcc 261  Q
    ||||||||||||| ||||||||| |||||||| |||||||||| |||   |||||||||||    
T  17750952 gacattgtgattgaccaatgtcaccaatgtca-tcaactctatgtcacacaagtgctatcc 17750893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 37155129 - 37155054
Alignment:
Q  173 tacttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||| ||| ||||||||||||     ||||||||||||||||||||||| |||||||||  ||||||||    
T  37155129 tacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatgtcaccaaactctat 37155054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 28395687 - 28395645
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  28395687 gacattgtgattggtcaatgtcaccaatgtcactcaactctat 28395645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 29179647 - 29179590
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||||||||||| || ||||| ||||||||| ||||||||| ||||| ||||||||    
T  29179647 gacattgtgattggtcagtgtcaccaatgtcacccaactctatgtcatccaagtgcta 29179590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 29179654 - 29179727
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     | ||||||||||||||||||||| ||||||||| |||||||||    
T  29179654 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctat 29179727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 31342313 - 31342248
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatccgataa 266  Q
    |||||||||||||||||||||||||  |||||| ||||||||| ||| | ||||| ||||| ||||    
T  31342313 gacattgtgattggccaatgtcatcggtgtcacccaactctatgtcacccaagtgttatcccataa 31342248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 44706841 - 44706914
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     | ||||||||||||||||||||| ||||||||| |||||||||    
T  44706841 cttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatgtcacccaactctat 44706914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 48993967 - 48993910
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgcta 258  Q
    |||||||||||||| |||||||| ||||||||| ||||||||| ||| | ||||||||    
T  48993967 gacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgcta 48993910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 46932045 - 46932005
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  46932045 cattgtgattggccaatgtcaccaatgtcacccaactctat 46932005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 32540798 - 32540756
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    |||||||||||||||||||| || ||||||||| |||||||||    
T  32540798 gacattgtgattggccaatgccaccaatgtcacccaactctat 32540756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 31342307 - 31342340
Alignment:
Q  225 caatgtcactcaactctatatcatcaaagtgcta 258  Q
    ||||||||| ||||||||||||||||||||||||    
T  31342307 caatgtcacccaactctatatcatcaaagtgcta 31342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 36290495 - 36290556
Alignment:
Q  201 gacattgtgattggccaatgtcatcaatgtcactcaactctatatcatcaaagtgctatccg 262  Q
    |||||||||||||| ||||| || ||||||||| ||||||||| ||| | |||| |||||||    
T  36290495 gacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagtactatccg 36290556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 48993974 - 48994047
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     | |||||||||||| |||||||| ||||||||| |||||||||    
T  48993974 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctat 48994047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 7104 - 7176
Alignment:
Q  175 cttgtgaaacagatagaaacacaagc-----gacattgtgattggccaatgtcatcaatgtcactcaactctat 243  Q
    ||||||||| ||| ||||||||||||     ||||||||||||||||||||||| ||||||||| |||||||||    
T  7104 cttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatgtcac-caactctat 7176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 27310 - 27354
Alignment:
Q  203 cattgtgattggccaatgtcatcaatgtcactcaactctatatca 247  Q
    ||||||||||||||||| ||| ||||||||| |||||||||||||    
T  27310 cattgtgattggccaatatcaccaatgtcacccaactctatatca 27354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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