View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_33 (Length: 389)
Name: NF11537_low_33
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 44622378 - 44622731
Alignment:
| Q |
19 |
aaatacaactgatatcaaacagcaaaaatgacaatcttaggttcatcacgagctaaaggaatagcgggataaaaaagcagtgttgtcaatcgcatattat |
118 |
Q |
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| T |
44622378 |
aaatgcaactgatatcaaacagcaaaaatgacaatcttaggttcatcacgagctaaaggaatagcggtataaaaaagcagtgttgtcaatcgcatattat |
44622477 |
T |
|
| Q |
119 |
gtaaaatagaagcttgttcaaattctgctatgctacaatgatatagctgctgtttggcaacagtttgtactagatcatattacgcataaataatagcaat |
218 |
Q |
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| T |
44622478 |
gtaaaatagaagcttgttcaaattctgctatgctacaatgctatagctgctgtttggtaacagtttgtactagatcatattacgcataaataatagcaat |
44622577 |
T |
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| Q |
219 |
tttttaatatttcaatacactatagcactatagcgccactatttgacaacactgtnnnnnnntacagttcaaatgtagagtatgtaaaagctaaagctag |
318 |
Q |
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| T |
44622578 |
tttttaatatttcaatacactaaagcactatagcgccactatttgacaacactgt-aaaaaatacagttcaaatgtagagtatgta------aaagctag |
44622670 |
T |
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| Q |
319 |
agtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctg |
379 |
Q |
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| T |
44622671 |
agtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctg |
44622731 |
T |
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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 39877943 - 39878010
Alignment:
| Q |
312 |
aagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctg |
379 |
Q |
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| T |
39877943 |
aagctagagtattactggatcggcaaaaaggttaaataaaaaaggctgcacatcatctagagtctctg |
39878010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 34925253 - 34925343
Alignment:
| Q |
100 |
gttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagctgctgtttggcaacagtttgtacta |
190 |
Q |
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||||||||| ||| || || ||||||| || ||||||||||||||||||||||||||| |||||| ||| |||| ||||| ||||||||| |
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| T |
34925253 |
gttgtcaattgcagatcgtggaaaatagcagtttgttcaaattctgctatgctacaatgctatagccgctatttgacaacattttgtacta |
34925343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 8558804 - 8558849
Alignment:
| Q |
121 |
aaaatagaagcttgttcaaattctgctatgctacaatgatatagct |
166 |
Q |
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| T |
8558804 |
aaaatagtagtttgttcaaattccgctatgctacaatgttatagct |
8558849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 24035976 - 24036067
Alignment:
| Q |
282 |
acagttcaaatgtagagtatgtaaaagctaaagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctg |
379 |
Q |
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|||||||||||||||| ||||| ||| |||||||||||||| |||| ||||||||| |||||| |||| || |||||||||||||||||||| |
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| T |
24035976 |
acagttcaaatgtagaatatgt------taatgctagagtattaccaggtcagcaaaaagggtaaatagaaaatatttcacatcttctagagtctctg |
24036067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 38434252 - 38434183
Alignment:
| Q |
96 |
cagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagc |
165 |
Q |
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||||||||||||||||| | | | ||||||| || ||||||||||||||||||| |||| || |||||| |
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| T |
38434252 |
cagtgttgtcaatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgctatagc |
38434183 |
T |
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