View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_34 (Length: 383)
Name: NF11537_low_34
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_34 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 559648 - 560024
Alignment:
| Q |
18 |
aacaatattgaagaccttcttgtgtggttaagggaaatttaggatattaatagggtgagagtctagtggca----------ctcacaattatgaaaaatt |
107 |
Q |
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| T |
559648 |
aacaatattgaagaccttcttgtgtggttaagggaaatttaggatattaatagggtgagagtctagtggcagttggttttcctcgcaattatgaaaaatt |
559747 |
T |
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| Q |
108 |
gcagttggttgagttgactttaatgcactctttcttagacgattatcgtgataatgatacatctcactacattaggaagagattatagctgatgtagtgg |
207 |
Q |
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| T |
559748 |
atagttggttgagttgactttaatgcactctttcttagacgattatcgtgacaatgatacatctcactacattaggaagagattatagctgatgtagtgg |
559847 |
T |
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| Q |
208 |
gaagtatca-tctcattatggtcattgtaaataattc-nnnnnnnngtgtatccgagccagaaatcaagtgactaaaatgttttatataagcgaggattg |
305 |
Q |
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| T |
559848 |
gaagtgtcattcccattatggtcgttgtaaataattcaaaaaaatagtgtattcgagccggaaatcaagtgactaaaatgttttatataagcgaggatta |
559947 |
T |
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| Q |
306 |
aaacgcagccgccattggaatttcaacatagtaatgcccttgagtttatttcaaccacgccagtccgttttcgatatc |
383 |
Q |
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| T |
559948 |
aaacgcagccgccattggaatttcaacatagtaatgcccttgagtttatttcaaccacg-cagtccgttttcgatatc |
560024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 93 - 296
Target Start/End: Original strand, 558047 - 558249
Alignment:
| Q |
93 |
caattatgaaaaattgcagttggttgagttgactttaatgcactctttcttagacgattatcgtgataatgatacatctcactacattaggaagagatta |
192 |
Q |
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| T |
558047 |
caattatgaaatattatagttggttgagttaactttaatgcactctttcttggacgattatcgtggcaataatacatctcactgtattaggaagagatta |
558146 |
T |
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| Q |
193 |
tagctgatgtagtgggaagtatcat-ctcattatggtcattgtaaataattcnnnnnnnngtgtatccgagccagaaatcaagtgactaaaatgttttat |
291 |
Q |
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| T |
558147 |
ttgccgttgtagttggaagtgtcatgcccatgattgttgttgtaaat--tccaagaaatagtgcatccgagaccgaaatcaagtgactaaaatgttttat |
558244 |
T |
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| Q |
292 |
ataag |
296 |
Q |
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| T |
558245 |
ataag |
558249 |
T |
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