View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_35 (Length: 383)
Name: NF11537_low_35
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 8721275 - 8720935
Alignment:
| Q |
22 |
gtggcatttagaaacatccaataaaaacatgacatgtcatttaagaacatagaaactgtcgtcatccctttgcatcatggtacggtatgttgaatccatg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8721275 |
gtggcatttagaaacatccaataaaaacatgacatgtcatttaagaacatagaaactgtcgtcatccctttgcatcatggtacggtatgttgaatccatg |
8721176 |
T |
|
| Q |
122 |
ttcttgttttacagtattactctaatattgtttcagaaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccatgataccac |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8721175 |
ttcttgttttacagtattactctaatattgtttcagaaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccacgataccac |
8721076 |
T |
|
| Q |
222 |
atctgtgataagtcatcagagtcaattcgagaacccatggaagagaaaattacaacctttcaagagaaatgagattccagatgcaaccataaaaatatta |
321 |
Q |
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||||||||||||||||||||| ||||||||||||| |||| |||||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
8721075 |
atctgtgataagtcatcagagccaattcgagaacctatggtagagaaaattgctaccttacaagagaaatgggattccagatgcaaccataaaaatatta |
8720976 |
T |
|
| Q |
322 |
aaactaattattgatttgacctaatgtttgaatggatttgc |
362 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
8720975 |
aaactaattattgatttgacctaatgtttgaatggatttgc |
8720935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 8704998 - 8705051
Alignment:
| Q |
8 |
aacgagcagaacctgtggcatttagaaacatccaataaaaacatgacatgtcat |
61 |
Q |
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||||| || ||| |||||||||||||||||||| || ||||||||||||||||| |
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| T |
8704998 |
aacgaacataacatgtggcatttagaaacatcctatgaaaacatgacatgtcat |
8705051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 46674146 - 46673806
Alignment:
| Q |
22 |
gtggcatttagaaacatccaataaaaacatgacatgtcatttaagaacatagaaactgtcgtcatccctttgcatcatggtacggtatgttgaatccatg |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46674146 |
gtggcatttagaaacattcaataaaaacatgacatgtcatttaagaacatagaaactgtcgtcatccctttgcatcatggtactgtatgttgaatccatg |
46674047 |
T |
|
| Q |
122 |
ttcttgttttacagtattactctaatattgtttcagaaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccatgataccac |
221 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46674046 |
ttcttgttttacagtattactctaataatgtttcagaaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccacgataccac |
46673947 |
T |
|
| Q |
222 |
atctgtgataagtcatcagagtcaattcgagaacccatggaagagaaaattacaacctttcaagagaaatgagattccagatgcaaccataaaaatatta |
321 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
46673946 |
atctgtgataagtcatcagagccaattcgagaacccatggaagagaaaattacaacctttcaagagaaatgggattccagatgcaactataaaaatatta |
46673847 |
T |
|
| Q |
322 |
aaactaattattgatttgacctaatgtttgaatggatttgc |
362 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
46673846 |
aaactaattattgatttgatctaatgtttgaatggatttgc |
46673806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 46673457 - 46673496
Alignment:
| Q |
22 |
gtggcatttagaaacatccaataaaaacatgacatgtcat |
61 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
46673457 |
gtggcatttagaaacatcctatgaaaacatgacatgtcat |
46673496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 22 - 362
Target Start/End: Original strand, 44427694 - 44428031
Alignment:
| Q |
22 |
gtggcatttagaaacatccaataaaaacatgacatgtcatttaagaacatagaaactgtcgtcatccctttgcatcatggtacggtatgttgaatccatg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44427694 |
gtggcatttagaaacatccaataaaaacatga-atgtcatttaagaacatagaaattgtcgtcatccctttgcatcatggtacagtatgttgaatccatg |
44427792 |
T |
|
| Q |
122 |
ttcttgttttacagtattactctaatattgtttcagaaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccatgataccac |
221 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44427793 |
ttcttgttttacggtattactttaatattgtttcataaaatctagaaaccatgttcaacaaccttttgaaacctccaaccaccatattccacgataccac |
44427892 |
T |
|
| Q |
222 |
atctgtgataagtcatcagagtcaattcgagaacccatggaagagaaaattacaacctttcaagagaaatgagattccagatgcaaccataaaaatatta |
321 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
44427893 |
atctgtgataagttatcagagccaattcgagaacccatggaagagaaaattgcaacctttcaagaaaaatgggattccagatgcaaccataaaaatatta |
44427992 |
T |
|
| Q |
322 |
aaactaattattgatttgacctaatgtttgaatggatttgc |
362 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
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| T |
44427993 |
aaactaattattgatttga--taatgtttgaatggatttgc |
44428031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 44428381 - 44428342
Alignment:
| Q |
22 |
gtggcatttagaaacatccaataaaaacatgacatgtcat |
61 |
Q |
| |
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||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
44428381 |
gtggcatttagaaacatcctatgaaaacatgacatgtcat |
44428342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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