View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_4 (Length: 835)
Name: NF11537_low_4
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_4 |
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| [»] scaffold0321 (2 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 11506 - 11762
Alignment:
| Q |
21 |
caaagaagacaatacgttaaaaaacttgagagattatgtaaaaactaaagcacacttatatatagacatcta-tctataagatgataagtggctatgcta |
119 |
Q |
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| T |
11506 |
caaagaagacaataggttaaaaaacttgagagattatgtaaaaactaaagcacacttatacatagacatctaatctataagataataagtggctatgcta |
11605 |
T |
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| Q |
120 |
tgctatgctatgagagataggttataaattattaataaaaaccatta---caattccagcaattacaagtgaagaagataagttaaaattagcttcaagt |
216 |
Q |
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| T |
11606 |
tgctatgctatgagagataggttataaattattaataaaaaccattattacaattccagcaattagaagtgaagaagataagttaaaattagcttcaagt |
11705 |
T |
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| Q |
217 |
taatctattcaagattcatattatgctcttctcatgcataatacattattgaaactt |
273 |
Q |
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| T |
11706 |
taatctattcaagattcatattatgctcttctcatgcataatacattattgaaactt |
11762 |
T |
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Target: scaffold0321; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 672 - 821
Target Start/End: Original strand, 11790 - 11935
Alignment:
| Q |
672 |
ttagtttctataacaggaagtacaaaaaattatgttttatgttatcaactcaagcttggcaaacactcttgatccaaggccaagtaaagcagctacttct |
771 |
Q |
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| T |
11790 |
ttagtttctataacaagaagtacaaaaa----tgttttatgtcatcaactcaagcttggcaaacactcttgatccaaggccatgtaaagcagctacttct |
11885 |
T |
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| Q |
772 |
gaagaaactactcttgtttcactcttgtttaaaaaaggtagtgaattgtg |
821 |
Q |
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| T |
11886 |
gaagaaactactcttgtttcactcttgtttaaaaaaggtagtgaagtgtg |
11935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 716 - 798
Target Start/End: Original strand, 8661204 - 8661283
Alignment:
| Q |
716 |
tcaactcaagcttggcaaacactcttgatccaaggccaagtaaagcagctacttctgaagaaactactcttgtttcactcttg |
798 |
Q |
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| T |
8661204 |
tcaactcaagctcggcaaacactcttgatccaaagccaagtaa---agctacttctgaagcaacgactcttgttgctctcttg |
8661283 |
T |
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