View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_low_42 (Length: 340)

Name: NF11537_low_42
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_low_42
NF11537_low_42
[»] chr7 (2 HSPs)
chr7 (18-206)||(3088232-3088420)
chr7 (269-328)||(3088489-3088548)
[»] chr6 (25 HSPs)
chr6 (21-123)||(4623797-4623905)
chr6 (24-123)||(4258709-4258811)
chr6 (18-95)||(4558612-4558689)
chr6 (20-123)||(4255354-4255460)
chr6 (18-83)||(4603597-4603662)
chr6 (20-88)||(4627639-4627707)
chr6 (18-85)||(4594497-4594564)
chr6 (21-95)||(4581504-4581578)
chr6 (18-85)||(4513553-4513620)
chr6 (18-85)||(4565516-4565583)
chr6 (20-95)||(4572455-4572530)
chr6 (18-88)||(4517827-4517897)
chr6 (24-85)||(4507404-4507465)
chr6 (20-116)||(4497788-4497884)
chr6 (21-85)||(4618791-4618855)
chr6 (18-116)||(3173490-3173588)
chr6 (21-89)||(4471404-4471472)
chr6 (17-109)||(4575941-4576033)
chr6 (18-89)||(4462694-4462765)
chr6 (18-85)||(4612292-4612359)
chr6 (18-116)||(4482352-4482450)
chr6 (18-116)||(4488740-4488838)
chr6 (18-68)||(4569557-4569607)
chr6 (33-89)||(4265627-4265683)
chr6 (18-82)||(4587119-4587183)
[»] chr8 (2 HSPs)
chr8 (18-111)||(20862358-20862451)
chr8 (18-84)||(1676008-1676074)
[»] chr3 (1 HSPs)
chr3 (18-85)||(1282920-1282987)
[»] scaffold0475 (1 HSPs)
scaffold0475 (21-91)||(2314-2384)
[»] scaffold0199 (1 HSPs)
scaffold0199 (18-84)||(1245-1311)
[»] scaffold0288 (1 HSPs)
scaffold0288 (21-85)||(2025-2089)
[»] chr5 (1 HSPs)
chr5 (25-89)||(24104589-24104653)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 3088232 - 3088420
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatcaacaaagtaactcatctttgatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3088232 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatcaacaaagtaactcatctttgatg 3088331  T
Q  118 aaacttaagttgctatatatttgcttgaaaaacaagggatctaagcctatgcttttatagaaaaaatacaattttaaaatggttaaggt 206  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  3088332 aaacttaagttgctatatatttgcttgaaaaacaagggatcaaagcctttgcttttatagaaaaaatacaattttaaaatagttaaggt 3088420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 3088489 - 3088548
Alignment:
Q  269 gctggctttgaatgactttttctctttattaagaaagctcaaccttataatattcatctc 328  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||    
T  3088489 gctggctttgaatgactttttctgtttattaaaaaagctcaaccttataatattcctctc 3088548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 4623797 - 4623905
Alignment:
Q  21 tttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggcttt------ttatcaacaaagtaactcatctttg 114  Q
    ||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||      |||| | |||| |||||||||||||    
T  4623797 tttgctagtttgaacaatggattgatatgaccttgaactggatatgcaatcaacacagcatgtggctttttattattattagcaaaataactcatctttg 4623896  T
Q  115 atgaaactt 123  Q
    |||||||||    
T  4623897 atgaaactt 4623905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 4258811 - 4258709
Alignment:
Q  24 gctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggcttt---ttatcaacaaagtaactcatctttgatgaaa 120  Q
    |||||||| ||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||   |||||| |||| |||||||||||||| ||||    
T  4258811 gctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtggctttttattatcagcaaaataactcatctttgaggaaa 4258712  T
Q  121 ctt 123  Q
    |||    
T  4258711 ctt 4258709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 4558612 - 4558689
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatca 95  Q
    |||||||||||||| ||||||||||| ||||| ||||||| |||||||||||| |||||||||||||| |||||||||    
T  4558612 agttttgctagtttcaacaatggattgatatggccttgaactggatatggaattaacacagcatgtggttttttatca 4558689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 4255460 - 4255354
Alignment:
Q  20 ttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggc---tttttatcaacaaagtaactcatctttgat 116  Q
    |||||||||||| || ||| |||| ||||| ||||||| ||||||||||||||||||||||||||||   || ||||||  ||| |||||||||||||||    
T  4255460 ttttgctagtttgaataatagattgatatggccttgaactggatatggaatcaacacagcatgtggcattttattatcagtaaaataactcatctttgat 4255361  T
Q  117 gaaactt 123  Q
    |||||||    
T  4255360 gaaactt 4255354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 4603597 - 4603662
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgt 83  Q
    |||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||    
T  4603597 agttttgctagtttcaacattggattgatatggccttgaagtggatatggaatcaacacagcatgt 4603662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 4627639 - 4627707
Alignment:
Q  20 ttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctt 88  Q
    |||||||||| | ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  4627639 ttttgctagtatcaacaatggattgatatggccttgaagtggaaatggaatcaacacagcatgtggctt 4627707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 4594497 - 4594564
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtgg 85  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||  |||||||||||||||||||||    
T  4594497 agttttgcaagtttgaacaatggatttatatgtccttgaagtggagctggaatcaacacagcatgtgg 4594564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 4581504 - 4581578
Alignment:
Q  21 tttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatca 95  Q
    ||||||||| |||  |||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  4581504 tttgctagtgttattaatggagtgatatgtccttgaagtggatatggaatcaacactgcatgtggctttttatca 4581578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 4513620 - 4513553
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtgg 85  Q
    |||||||||| | | |||| |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  4513620 agttttgctaatctgaacattggattgatatggccttgaagtggatatggaatcaacacagcatgtgg 4513553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 4565516 - 4565583
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtgg 85  Q
    |||||||| ||||| ||||||||||||||||| ||||||| ||||  |||||||||||||||||||||    
T  4565516 agttttgcaagtttgaacaatggatttatatgtccttgaaatggagctggaatcaacacagcatgtgg 4565583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 4572455 - 4572530
Alignment:
Q  20 ttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatca 95  Q
    |||||||||||  ||||||||||| ||||| ||||||| ||||||||| || |||||||||||||| |||||||||    
T  4572455 ttttgctagttgcaacaatggattgatatggccttgaactggatatgggattaacacagcatgtggttttttatca 4572530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 4517827 - 4517897
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctt 88  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||||||| | | ||| |||||||||||    
T  4517827 agttttgctagttttaacaacggattgatatggccttgaagtggatatggagttatcactgcatgtggctt 4517897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 4507404 - 4507465
Alignment:
Q  24 gctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtgg 85  Q
    |||||||| ||||||||||| ||||| ||||||  |||||||||||||||||||||||||||    
T  4507404 gctagtttgaacaatggattgatatggccttgagttggatatggaatcaacacagcatgtgg 4507465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 4497884 - 4497788
Alignment:
Q  20 ttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatcaacaaagtaactcatctttgat 116  Q
    |||| ||||||| ||||||||||| ||||| |||| || |||| ||||| | ||||| |||||||||||||| ||  |||||| |||||||||||||    
T  4497884 ttttcctagtttcaacaatggattgatatggccttaaattggaaatggagttaacactgcatgtggctttttctcttcaaagttactcatctttgat 4497788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 4618791 - 4618855
Alignment:
Q  21 tttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtgg 85  Q
    ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| |||| |||||||    
T  4618791 tttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg 4618855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 3173490 - 3173588
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatcaacaaagtaactcatctttgat 116  Q
    |||||||||||||| ||||||| ||| ||||| ||||||| |||||||||| | ||||| |||||||| ||| | |   |||||| |||||||||||||    
T  3173490 agttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgcaaagttactcatctttgat 3173588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 4471404 - 4471472
Alignment:
Q  21 tttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggcttt 89  Q
    ||||||||||| ||||||| ||| ||||| ||||||  |||| |||||||||| |||||||||||||||    
T  4471404 tttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggcttt 4471472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 4575941 - 4576033
Alignment:
Q  17 cagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatcaacaaagtaactcat 109  Q
    ||||||||||| ||| ||||||| ||| ||||| ||||||| |||| ||||| | ||||| |||||||||||||| ||  |||||| ||||||    
T  4575941 cagttttgctattttcaacaatgcattgatatggccttgaactggaaatggagttaacactgcatgtggctttttctcttcaaagttactcat 4576033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 4462694 - 4462765
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggcttt 89  Q
    |||||| ||||||| ||||||| ||| ||||| |||||   |||| ||||||||||||||||||||||||||    
T  4462694 agttttcctagtttcaacaatgcattgatatggccttgggatggacatggaatcaacacagcatgtggcttt 4462765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 4612359 - 4612292
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtgg 85  Q
    |||||||||||||| |  |||||||| ||||| ||||||| |||||||||||| ||||| ||||||||    
T  4612359 agttttgctagtttgattaatggattgatatggccttgaactggatatggaattaacactgcatgtgg 4612292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 4482352 - 4482450
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatcaacaaagtaactcatctttgat 116  Q
    |||||| ||| ||| ||||||| ||| ||||| ||||||  |||| ||||| ||||||| |||||||| ||||| ||  |||||| |||||||||||||    
T  4482352 agttttcctattttcaacaatgcattgatatggccttgagctggaaatggagtcaacactgcatgtggttttttttctgcaaagttactcatctttgat 4482450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 4488838 - 4488740
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatcaacaaagtaactcatctttgat 116  Q
    |||||| ||||||| ||||||| ||| ||||| ||||||| |||| ||||  | ||||| |||||||||||| | ||  |||||| |||||||||||||    
T  4488838 agttttcctagtttcaacaatgcattgatatggccttgaactggaaatggtgttaacactgcatgtggctttctctcttcaaagttactcatctttgat 4488740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 4569557 - 4569607
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatgga 68  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  4569557 agttttgctagtttcaataatggattgatatggccttgaagtggatatgga 4569607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 4265683 - 4265627
Alignment:
Q  33 aacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggcttt 89  Q
    ||||||| ||| ||||| ||||||| ||||  |||||||||||||||||||||||||    
T  4265683 aacaatgcattgatatggccttgaaatggagctggaatcaacacagcatgtggcttt 4265627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 4587119 - 4587183
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatg 82  Q
    ||||| |||||||| ||||||||||| ||||| ||||||| |||| |||| || |||||||||||    
T  4587119 agtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 4587183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 20862451 - 20862358
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatcaacaaagtaactcatct 111  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||| |||||||| ||||| ||| |||| | ||||||||    
T  20862451 agttttgctagttttaacattggattgatatgaccttgaagtggatatggagttaacactgcatgtggttttttctcagcaaaattactcatct 20862358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 1676008 - 1676074
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtg 84  Q
    |||||||||||||| ||||||||||| ||||| ||||||  |||||||||||| |||||||||||||    
T  1676008 agttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtg 1676074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 1282920 - 1282987
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtgg 85  Q
    |||||||||||||| ||||||||||| ||||| ||||||  |||||||||||||||||||||||||||    
T  1282920 agttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtgg 1282987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 2314 - 2384
Alignment:
Q  21 tttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggcttttt 91  Q
    ||||||||||| || |||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  2314 tttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggtttttt 2384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 1245 - 1311
Alignment:
Q  18 agttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtg 84  Q
    |||||||||||||| ||||||||||| ||||| ||||||  |||||||||||| |||||||||||||    
T  1245 agttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtg 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 2089 - 2025
Alignment:
Q  21 tttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtgg 85  Q
    ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| |||| |||||||    
T  2089 tttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg 2025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 24104589 - 24104653
Alignment:
Q  25 ctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggcttt 89  Q
    ||||||| ||||||| ||| ||||||||||||| ||||  |||||||||||||||||| ||||||    
T  24104589 ctagtttgaacaatgcattgatatgaccttgaaatggagctggaatcaacacagcatgcggcttt 24104653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University