View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_44 (Length: 326)
Name: NF11537_low_44
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 7698349 - 7698663
Alignment:
| Q |
1 |
atatcagaaaatttgatagcagtccacgttttgacttatgtatttgtgttaggacagactggttt-aagcattttacttttcatcgataattnnnnnnnn |
99 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
7698349 |
atatcagaaaatttgatatcattccacgttttgacttatgtatttgtgttaggacaaactggttttaagcattttacttttcatcgataattaaaaaata |
7698448 |
T |
|
| Q |
100 |
nnnnnnnnnntatcccctattagagtctgaaaaattcgtaaaacatataatttaagccacgatacaccagcttctttacaatatataagaatctggaact |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7698449 |
aattaaaaaatatcccctattagagtctgaaaaattcgtaaaacata--atttaagccacgctacaccagcttctttacaatatataagaatctggaact |
7698546 |
T |
|
| Q |
200 |
cttcattttttctgggctgccgaactctgaaggtgggagaggaaaatacaagtacaccaatttacacaaactcttgtgctctaccggatcgatcctacta |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7698547 |
cttcattttttctgggctgccgaactctgaaggtgggagaggaaaatacaagtacaccaatttacacaaactcttgtgctctaccggatcgatcctacta |
7698646 |
T |
|
| Q |
300 |
caatcaattgtgttctt |
316 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
7698647 |
caatcaattgtgttctt |
7698663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 114 - 317
Target Start/End: Complemental strand, 50029852 - 50029649
Alignment:
| Q |
114 |
ccctattagagtctgaaaaattcgtaaaacatataatttaagccacgatacaccagcttctttacaatatataagaatctggaactcttcattttttctg |
213 |
Q |
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||||||||| ||| |||||| |||| |||||||||||||| ||||| | || ||||||||||||| |||||||||||||||||||||||||| ||| || |
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| T |
50029852 |
ccctattagggtcggaaaaactcgtgaaacatataatttacgccacactgcatcagcttctttacactatataagaatctggaactcttcattctttatg |
50029753 |
T |
|
| Q |
214 |
ggctgccgaactctgaaggtgggagaggaaaatacaagtacaccaatttacacaaactcttgtgctctaccggatcgatcctactacaatcaattgtgtt |
313 |
Q |
| |
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||| | |||| ||||| |||| ||||| ||| || || | ||||| ||||||||||||||||||| || ||| || |||||||||| |||| |||||| |
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| T |
50029752 |
ggccgtcgaaagttgaagctgggggaggagaatccatgtgccccaatctacacaaactcttgtgctcgactggaccggtcctactacattcaactgtgtt |
50029653 |
T |
|
| Q |
314 |
cttc |
317 |
Q |
| |
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|||| |
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|
| T |
50029652 |
cttc |
50029649 |
T |
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