View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_46 (Length: 318)
Name: NF11537_low_46
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 29203761 - 29203461
Alignment:
| Q |
1 |
tattatatgtttataactatattaaattttttcgaggcattttattagcccaaaattttgaggcctaaagctctgacttgggtcgcttgacccttgggct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203761 |
tattatatgtttataactatattaaattttttcgaggcattttattagcccaaaattttgaggcctaaagctctgacttgggtcgcttgacccttgggct |
29203662 |
T |
|
| Q |
101 |
gaccctgtgtctaatattgacattagtggttttagaaaatatctggaaaaatcttatcgatcctaaaaatcaccaaaatacatggttgtcctgaaaccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203661 |
gaccctgtgtctaatattgacattagtggttttagaaaatatctggaaaaatcttatcgatcctaaaaatcaccaaaatacatggttgtcctgaaaccag |
29203562 |
T |
|
| Q |
201 |
atgaaaaagtgacaaatgcttactgcaaaagtttctctattcgtcgaccgaaagtatccacaataagtgcatcctcttttctgttctgaattacgcatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29203561 |
atgaaaaagtgacaaatgcttactgcaaaagtttctctattcgtcgaccgaaagtatccacaataagtgcatcctcttttctgttctgaattacgcatct |
29203462 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
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| |
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|
| T |
29203461 |
c |
29203461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 12648115 - 12648415
Alignment:
| Q |
1 |
tattatatgtttataactatattaaattttttcgaggcattttattagcccaaaattttgaggcctaaagctctgacttgggtcgcttgacccttgggct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12648115 |
tattatatgtttataactatattaaattttttcgaggcattttttcagcccaaaattttgaggcctaaagctctgacttgggtcgcttgacccttgggct |
12648214 |
T |
|
| Q |
101 |
gaccctgtgtctaatattgacattagtggttttagaaaatatctggaaaaatcttatcgatcctaaaaatcaccaaaatacatggttgtcctgaaaccag |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
12648215 |
gaccctgtgtctaatattgacattagcggttttagaaaatatctggaaaaatcttatcgatcataaaaatcaccaaaatacatggttgtcctgaaacctg |
12648314 |
T |
|
| Q |
201 |
atgaaaaagtgacaaatgcttactgcaaaagtttctctattcgtcgaccgaaagtatccacaataagtgcatcctcttttctgttctgaattacgcatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12648315 |
atgaaaaagtgacaaatgcttactgcaaaagtttctctattcgtcgaccgaaagtatccacaataagtgcatcctcttttctgttctgaattacacatct |
12648414 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
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| |
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|
| T |
12648415 |
c |
12648415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 21486052 - 21486099
Alignment:
| Q |
48 |
gcccaaaattttgaggcctaaagctctgacttgggtcgcttgaccctt |
95 |
Q |
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|||||||||||||||||||||||| || ||||| || ||||||||||| |
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| T |
21486052 |
gcccaaaattttgaggcctaaagcccttacttgagttgcttgaccctt |
21486099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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