View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_48 (Length: 301)
Name: NF11537_low_48
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 35748696 - 35748412
Alignment:
| Q |
1 |
atttgtctcaagaaaggaattaatttgattgatcttacactcaaagctactaatggatgcgtatgtatttggtttgatcaaaagtttaccaaaaaacatt |
100 |
Q |
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| T |
35748696 |
atttgtctcaagaaagcaattaatttgattgatcttacactcaaagctactaatggatgcgtatgtatttggtttgatcaaaagtttaccaaaaaacatt |
35748597 |
T |
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| Q |
101 |
caaaggctttctattggtccatgactcggtgtttacaagtttagaaaacaaacatcactatagattgtatatttattattttcagttgggtaagattcta |
200 |
Q |
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| T |
35748596 |
caaaggctttctattggtccatgactcggtgtttacaaggttagaaaacaaacatcactatagattgtatatttattattttcagttgggtaagattcta |
35748497 |
T |
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| Q |
201 |
tctcacatgttagtttcgtattaaacaaagcataatattctgttgacatatatggatttgttcaaatttatatttgacttattat |
285 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35748496 |
tctcacatgttagtttggtattaaacaaagcataatattctgttgacatatatggatttgttcaaatttatatttgacttattat |
35748412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 35742328 - 35742064
Alignment:
| Q |
1 |
atttgtctcaagaaaggaattaatttgattgatcttacactcaaagctactaatggatgcgtatgtatttggtttgatcaaaagtttaccaaaaaacatt |
100 |
Q |
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|||||||||||||||| || |||| ||||||||||| |||||||||||||| | | ||| || ||||||||||||||||||| |||||||||||| |
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| T |
35742328 |
atttgtctcaagaaagcaaataatctgattgatcttgcactcaaagctactgagagctgcacat----ttggtttgatcaaaagtttgccaaaaaacatt |
35742233 |
T |
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| Q |
101 |
caaaggctttctattggtccatgactcggtgtttacaagtttagaaaacaaacatcactatagattgtatatttattattttcagttgggtaagattcta |
200 |
Q |
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| T |
35742232 |
caaaggctttctattagttcacgacgcggtatttacaaggttagaaaac-atcatcacta--------atattt-tgatttt-acaaggttaagattcta |
35742144 |
T |
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| Q |
201 |
tc---tcacatgttagtttcgtattaaacaaagcata----atattctgttgacatatatggatttgttcaaatttatat |
273 |
Q |
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|| |||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
35742143 |
tctgatcacatgttagtttggtatcaaacaaagcataatatatattctgttgacatatatggacttgttcaaatttatat |
35742064 |
T |
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