View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_51 (Length: 279)
Name: NF11537_low_51
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 12492730 - 12492476
Alignment:
| Q |
19 |
aaaaacctcaggatcatcgaaaaccctaggatcttttgtcgcgaaaggttggtatccaaatatcatctcacccttttttatttcaaaagccgcgtcgtga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12492730 |
aaaaacctcaggatcatcgaaaaccctaggatcttttgtcgcgaaaggttggtatccaaatatcatctcacccttttttatttcaaaagccgcgtcgtga |
12492631 |
T |
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| Q |
119 |
ctcttcacaattaaatcttctcttgcttttgcatattgataaggcacagcaggttcaattcgcatcgcttcatagacaactgatttaactaacggcattt |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12492630 |
ctcttcacgattaaatcttctcttgcttttgcatattgataaggcacagcaggttcaattcgcatcgcttcatagacaactgatttaactaacggcattt |
12492531 |
T |
|
| Q |
219 |
tttctaacgactgaattgttactccgccttcttgttttaccacggttcttctctc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12492530 |
tttctaacgactgaattgttactccgccttcttgttttaccacggttcttatctc |
12492476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 12507660 - 12507406
Alignment:
| Q |
19 |
aaaaacctcaggatcatcgaaaaccctaggatcttttgtcgcgaaaggttggtatccaaatatcatctcacccttttttatttcaaaagccgcgtcgtga |
118 |
Q |
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||||| ||||| ||||||||||||||||||||| || || || |||| |||||| || || ||||||||||||||||| ||||||||||| || |||||| |
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| T |
12507660 |
aaaaatctcagcatcatcgaaaaccctaggatccttagtagcaaaagattggtacccgaaaatcatctcaccctttttaatttcaaaagctgcatcgtga |
12507561 |
T |
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| Q |
119 |
ctcttcacaattaaatcttctcttgcttttgcatattgataaggcacagcaggttcaattcgcatcgcttcatagacaactgatttaactaacggcattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | || |||||||||| | || ||||||| ||||| ||||||||||| | ||||| |
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| T |
12507560 |
ctcttcacaattaaatcttctcttgcttttgcatattgataacgaacgacaggttcaatcctcaaaacttcataaacaacggatttaactaatgacattt |
12507461 |
T |
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| Q |
219 |
tttctaacgactgaattgttactccgccttcttgttttaccacggttcttctctc |
273 |
Q |
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|||||||||||||||||||||| |||||||| | |||||| | ||||||| |||| |
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| T |
12507460 |
tttctaacgactgaattgttaccccgccttcgttttttacaatggttcttatctc |
12507406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 25733268 - 25733138
Alignment:
| Q |
49 |
atcttttgtcgcgaaaggttggtatccaaatatcatctcacccttttttatttcaaaagccgcgtcgtgactcttcacaattaaatcttctcttgctttt |
148 |
Q |
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||||||||| ||||| ||||| |||||||| ||||| ||||| || || || ||||||| || || || |||| ||| | || ||| || || ||||| |
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| T |
25733268 |
atcttttgtagcgaacggttgatatccaaagatcatttcacctttcttgatctcaaaagatgcatcatggctctgcaccactagatcctccctagcttta |
25733169 |
T |
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| Q |
149 |
gcatattgataaggcacagcaggttcaattc |
179 |
Q |
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||||||||||| || |||||||||||||||| |
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| T |
25733168 |
gcatattgatatggaacagcaggttcaattc |
25733138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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