View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11537_low_52 (Length: 277)
Name: NF11537_low_52
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_52 |
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| [»] scaffold0043 (4 HSPs) |
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| [»] scaffold1142 (1 HSPs) |
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Alignment Details
Target: scaffold0043 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 30121 - 30366
Alignment:
| Q |
14 |
agatatatgctgcaagaggtttctacgtcaggaacaaaaaatgaccaagacattttcattttatgcagagtatcaagtcaagttttgaagatgttgatct |
113 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30121 |
agatatatgctgcaagagggttctacgtcaggaacaaaaaatgaccaagacattttcattttatgcagagtatcaagtcaagtattgaagatgttgatct |
30220 |
T |
|
| Q |
114 |
tggagactctcatgaaacaactccgactaaaaataatagtcaaggtgaagactttttggatcaactttgttttcttatgctacctcatcattgttttgat |
213 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30221 |
tggagactctcatgaaacaactcagactaaaaataatagtcaaggtgaagactttttggatcaactttgttttcttatgctacctcatcatccttttgat |
30320 |
T |
|
| Q |
214 |
tttgaatttacacatgttgttcagtttttctaaacgacgaggttgt |
259 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30321 |
tttgaatttacacatgttgttcagtttctctaaacgacgaggttgt |
30366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 44979 - 45224
Alignment:
| Q |
14 |
agatatatgctgcaagaggtttctacgtcaggaacaaaaaatgaccaagacattttcattttatgcagagtatcaagtcaagttttgaagatgttgatct |
113 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44979 |
agatatatgctgcaagagggttctacgtcaggaacaaaaaatgaccaagacattttcattttatgcagagtatcaagtcaagtattgaagatgttgatct |
45078 |
T |
|
| Q |
114 |
tggagactctcatgaaacaactccgactaaaaataatagtcaaggtgaagactttttggatcaactttgttttcttatgctacctcatcattgttttgat |
213 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45079 |
tggagactctcatgaaacaactcagactaaaaataatagtcaaggtgaagactttttggatcaactttgttttcttatgctacctcatcatccttttgat |
45178 |
T |
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| Q |
214 |
tttgaatttacacatgttgttcagtttttctaaacgacgaggttgt |
259 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
45179 |
tttgaatttacacatgttgttcagtttctctaaacgacgaggttgt |
45224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 231
Target Start/End: Complemental strand, 52951 - 52790
Alignment:
| Q |
69 |
tcattttatgcagagtatcaagtcaagttttgaagatgttgatcttggagactctcatgaaacaactccgactaaaaataatagtcaaggtgaagacttt |
168 |
Q |
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||||||| |||||||| ||| || |||| |||||||| ||||| || | |||||| |||||| ||| |||||| | ||| ||||||||||||||| |
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| T |
52951 |
tcattttgtgcagagtgtcaggttaagtattgaagatattgataatgttgcctctcaggaaacatctcagactaatatcaat---caaggtgaagacttt |
52855 |
T |
|
| Q |
169 |
ttggatcaactttgttttcttatgctacctcatcattgttttg--attttgaatttacacatgtt |
231 |
Q |
| |
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||||||||| ||| |||||||||| ||||||||||| ||||| ||| ||| |||||||||||| |
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| T |
52854 |
ttggatcaattttattttcttatgttacctcatcatccttttgatattatgattttacacatgtt |
52790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 53095 - 53058
Alignment:
| Q |
26 |
caagaggtttctacgtcaggaacaaaaaatgaccaaga |
63 |
Q |
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||||||| |||||||||||||||||| ||||||||||| |
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| T |
53095 |
caagagggttctacgtcaggaacaaagaatgaccaaga |
53058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 27390127 - 27389956
Alignment:
| Q |
66 |
ttttcattttatgcagagtatcaagtcaagttttgaagatgttgatcttggagactctcatgaaacaactccgactaaaaataatagtcaaggtgaagac |
165 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| || |
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| T |
27390127 |
ttttcattttatgcagagtatccagtcaagttttgaagatgttgatcttggagactctcatgaaacaactcagact---aataataatcaaggtgaatac |
27390031 |
T |
|
| Q |
166 |
tttttggatcaactttgttttcttatgctacctcatcattgttttgattttgaatttacacatgttgttcagttt |
240 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||| ||| ||||||||||||| || || |||||||||||||| |
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|
| T |
27390030 |
attttgaatcaacattgttttcttatactacctcgtcacccttttgattttgaactttcatatgttgttcagttt |
27389956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 231
Target Start/End: Original strand, 27378467 - 27378633
Alignment:
| Q |
64 |
cattttcattttatgcagagtatcaagtcaagttttgaagatgttgatcttggagactctcatgaaacaactccgactaaaaataatagtcaaggtgaag |
163 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| || | ||||||| ||||||||||| |
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| T |
27378467 |
cattttccttttatttagaggatcaagtcaagttttgaagatgttgatcttggtgactctcatgaaccaactcagatt---aataataatcaaggtgaag |
27378563 |
T |
|
| Q |
164 |
actttttggatcaactttgttttcttatgctacctcatcattgttttg--attttgaatttacacatgtt |
231 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||||| ||||| ||| ||| |||||||||||| |
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|
| T |
27378564 |
actttttggatcaattttattttcttatgttacctcatcatccttttgatattatgattttacacatgtt |
27378633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 19484361 - 19484212
Alignment:
| Q |
89 |
agtcaagttttgaagatgttgatcttggagactctcatgaaacaactccgactaaaaataatagtcaaggtgaagactttttggatcaactttg-ttttc |
187 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||||| || |||||||||||| ||| ||||| |
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| T |
19484361 |
agtcaaattttgaagatgttgatcttgaagactctcatgaaacaactcagact---aataataatcaaggtgaatacattttggatcaacattgtttttc |
19484265 |
T |
|
| Q |
188 |
ttatgctacctcatcattgttttgattttgaatttacacatgttgttcagttt |
240 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| || |||||||||||||| |
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|
| T |
19484264 |
ttatgctacaccatcacccttttgattttgaattttcatatgttgttcagttt |
19484212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 19474842 - 19474936
Alignment:
| Q |
153 |
tcaaggtgaagactttttggatcaactttgttttcttatgctacctcatcattgttttgattttgaatttacacatgttgttcagtttttctaaa |
247 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
19474842 |
tcaaggtgatgaattttttgatcaactttgtttttttatgctatctcatcacccttttgattttgaatttacacatgttgttcagtttctctaaa |
19474936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 213
Target Start/End: Original strand, 27349131 - 27349275
Alignment:
| Q |
66 |
ttttcattttatgcagagtatcaagtcaagttttgaagatgttgatcttggagactctcatgaaacaactccgactaaaaataatagtcaaggtgaagac |
165 |
Q |
| |
|
|||||||||| |||||||| ||| || |||| |||||||| ||||| || || |||||| |||||||||| || ||| || ||| |||||||||||| |
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|
| T |
27349131 |
ttttcattttgtgcagagtgtcaggttaagtattgaagatattgataatgtagcctctcaggaaacaactcagattaataacaat---caaggtgaagac |
27349227 |
T |
|
| Q |
166 |
tttttggatcaactttgttttcttatgctacctcatcattgttttgat |
213 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
27349228 |
tttttggatcaattttattttcttatgttacctcatcatccttttgat |
27349275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 19484432 - 19484364
Alignment:
| Q |
66 |
ttttcattttatgcagagtatcaagtcaagttttgaagatgttgatcttggagactctcatgaaacaac |
134 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| || |||||||| |
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|
| T |
19484432 |
ttttcattttatgcagagtgtaaagtcaaattttgaagatgttgatcttggagactcccaggaaacaac |
19484364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 19474758 - 19474795
Alignment:
| Q |
26 |
caagaggtttctacgtcaggaacaaaaaatgaccaaga |
63 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19474758 |
caagagggttctacgtcaggaacaaaaaatgaccaaga |
19474795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 26629637 - 26629674
Alignment:
| Q |
155 |
aaggtgaagactttttggatcaactttgttttcttatg |
192 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
26629637 |
aaggtgaagactttttggatcaattttattttcttatg |
26629674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 27348994 - 27349031
Alignment:
| Q |
26 |
caagaggtttctacgtcaggaacaaaaaatgaccaaga |
63 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
27348994 |
caagagggttctacgtcaggaacaaagaatgaccaaga |
27349031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1142 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold1142
Description:
Target: scaffold1142; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 64 - 259
Target Start/End: Original strand, 363 - 555
Alignment:
| Q |
64 |
cattttcattttatgcagagtatcaagtcaagttttgaagatgttgatcttggagactctcatgaaacaactccgactaaaaataatagtcaaggtgaag |
163 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| || | ||||||| ||||||||||| |
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|
| T |
363 |
catttccattttatgcagatgatcaagtcaagttttgaagatgttgatcttggcgactctcatgaacgaactcagatt---aataataatcaaggtgaag |
459 |
T |
|
| Q |
164 |
actttttggatcaactttgttttcttatgctacctcatcattgttttgattttgaatttacacatgttgttcagtttttctaaacgacgaggttgt |
259 |
Q |
| |
|
||||||||||| || ||| | || || ||| |||||| ||| ||||||| |||||||||||||||||||||||| |||||| ||||| ||||| |
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|
| T |
460 |
actttttggattaattttctcttattttgccacctcaacatctatttgattctgaatttacacatgttgttcagttcctctaaatgacgatgttgt |
555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 22393445 - 22393577
Alignment:
| Q |
69 |
tcattttatgcagagtatcaagtcaagttttgaagatgttgatcttggagactctcatgaaacaactccgactaaaaataatagtcaaggtgaagacttt |
168 |
Q |
| |
|
||||||| |||||||| ||| || |||| |||||||| ||||| || | |||||| |||||| ||| |||||| | ||| ||||||||||||||| |
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|
| T |
22393445 |
tcattttgtgcagagtgtcaggttaagtattgaagatattgataatgttgcctctcaggaaacatctcagactaatatcaat---caaggtgaagacttt |
22393541 |
T |
|
| Q |
169 |
ttggatcaactttgttttcttatgctacctcatcat |
204 |
Q |
| |
|
||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
22393542 |
ttggatcaattttattttcttatgttacctcatcat |
22393577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 22393301 - 22393338
Alignment:
| Q |
26 |
caagaggtttctacgtcaggaacaaaaaatgaccaaga |
63 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
22393301 |
caagagggttctacgtcaggaacaaagaatgaccaaga |
22393338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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