View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11537_low_53 (Length: 269)
Name: NF11537_low_53
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_53 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 32062028 - 32062268
Alignment:
| Q |
18 |
acttcattagcccaatccaatggcgttgcagccggcgtgggggtttcacccttctcgccaccaacggaacttgacgccgtcatgggtgaggaaattcctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062028 |
acttcattagcccaatccaatggcgttgcagccggcgtgggggtttcacccttctcgccaccaacggaacttgacgccgtcatgggtgaggaaattcctt |
32062127 |
T |
|
| Q |
118 |
cttcatgatgagtaggagtgnnnnnnnnnnnnnnnnnnnnnngaggattactccctccctgaacttcaatattgttgttttccttgatgattattctgtt |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062128 |
cttcatgatgagtaggagtggaagaagaagaacaagaagaaggaggattactccctccctgaacttcaatattgttgttttccttgatgattattctgtt |
32062227 |
T |
|
| Q |
218 |
ccagccagaggattcgagagttgtgtgttgttcgatttctt |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062228 |
ccagccagaggattcgagagttgtgtgttgttcgatttctt |
32062268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University