View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_low_54 (Length: 268)

Name: NF11537_low_54
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_low_54
NF11537_low_54
[»] chr8 (8 HSPs)
chr8 (20-103)||(15804998-15805081)
chr8 (62-163)||(15812773-15812874)
chr8 (20-130)||(15763966-15764073)
chr8 (210-258)||(15812910-15812958)
chr8 (222-260)||(15805081-15805119)
chr8 (213-258)||(15799527-15799572)
chr8 (227-258)||(15697033-15697064)
chr8 (226-258)||(15722253-15722285)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 15804998 - 15805081
Alignment:
Q  20 ctacccatgtgttttcctaagcaagatcgaggtagtaagctttgtttatacattatcaatattttgtaaccaagagcctctcaa 103  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15804998 ctaccgatgtgttttcctaagcaagatcgaggtagcaagctttgtttatacattatcaatattttgtaaccaagagcctatcaa 15805081  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 15812773 - 15812874
Alignment:
Q  62 tgtttatacattatcaatattttgtaaccaagagcctctcaattaaaggcagtgttagtgatttcataaaaatataaaactatttttggcttggagtact 161  Q
    ||||||||||||||||||||||  ||  |||||| |||||  || |||||| ||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  15812773 tgtttatacattatcaatatttcatattcaagagactctcctttgaaggcaatgttagtgatttcataaaactataaaacaatttttggcttggaatact 15812872  T
Q  162 tg 163  Q
    ||    
T  15812873 tg 15812874  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 15763966 - 15764073
Alignment:
Q  20 ctacccatgtgttttcctaagcaagatcgaggtagtaagctttgtttatacattatcaatattttgtaaccaagagcctctcaattaaaggcagtgttag 119  Q
    ||||||||||||||| |||||| ||||| |||| | | | |||||||||   ||||||||||||||||  || |||||||||| ||||||| | |||||     
T  15763966 ctacccatgtgtttttctaagctagatcaaggttgcatggtttgtttat---ttatcaatattttgtactcaggagcctctcatttaaagggaatgttaa 15764062  T
Q  120 tgatttcataa 130  Q
     ||||||||||    
T  15764063 agatttcataa 15764073  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 15812910 - 15812958
Alignment:
Q  210 atgagatgtgataaagaaaactcacatataatagaagactttgcctatg 258  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  15812910 atgagatgtgataaggaaaacttacatataatagaagactttgcatatg 15812958  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 15805081 - 15805119
Alignment:
Q  222 aaagaaaactcacatataatagaagactttgcctatgct 260  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  15805081 aaagaaaactcacatataatagaagactttgcatatgct 15805119  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 15799527 - 15799572
Alignment:
Q  213 agatgtgataaagaaaactcacatataatagaagactttgcctatg 258  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  15799527 agatgtgataaggaaaactcacatatagtagaagactttgcatatg 15799572  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 258
Target Start/End: Original strand, 15697033 - 15697064
Alignment:
Q  227 aaactcacatataatagaagactttgcctatg 258  Q
    ||||||||||||||||||||||||||||||||    
T  15697033 aaactcacatataatagaagactttgcctatg 15697064  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 15722253 - 15722285
Alignment:
Q  226 aaaactcacatataatagaagactttgcctatg 258  Q
    ||||||||||| |||||||||||||||||||||    
T  15722253 aaaactcacatgtaatagaagactttgcctatg 15722285  T

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