View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_low_57 (Length: 257)

Name: NF11537_low_57
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_low_57
NF11537_low_57
[»] chr2 (11 HSPs)
chr2 (3-246)||(34468761-34469000)
chr2 (205-246)||(6030606-6030647)
chr2 (205-246)||(1085460-1085501)
chr2 (205-246)||(18615517-18615558)
chr2 (205-246)||(29219386-29219427)
chr2 (205-246)||(29220950-29220991)
chr2 (205-246)||(29332685-29332726)
chr2 (205-246)||(29334249-29334290)
chr2 (205-246)||(44192520-44192561)
chr2 (205-246)||(1082989-1083030)
chr2 (205-246)||(18617080-18617121)
[»] chr8 (6 HSPs)
chr8 (205-246)||(13116331-13116372)
chr8 (205-246)||(13117707-13117748)
chr8 (205-246)||(42098564-42098605)
chr8 (205-246)||(17338042-17338083)
chr8 (205-246)||(17339623-17339664)
chr8 (205-246)||(42100180-42100221)
[»] chr6 (15 HSPs)
chr6 (205-246)||(2687998-2688039)
chr6 (203-246)||(29722662-29722705)
chr6 (205-246)||(5187696-5187737)
chr6 (205-246)||(6701381-6701422)
chr6 (205-246)||(6702944-6702985)
chr6 (205-246)||(17839213-17839254)
chr6 (205-246)||(32507100-32507141)
chr6 (205-244)||(12256660-12256699)
chr6 (205-246)||(5186569-5186610)
chr6 (205-246)||(17837617-17837658)
chr6 (205-246)||(18346824-18346865)
chr6 (205-246)||(23392215-23392256)
chr6 (205-246)||(23397428-23397469)
chr6 (205-246)||(29380192-29380233)
chr6 (205-246)||(29381804-29381845)
[»] chr5 (3 HSPs)
chr5 (205-246)||(30910742-30910783)
chr5 (205-246)||(33174034-33174075)
chr5 (205-246)||(30912236-30912277)
[»] chr4 (10 HSPs)
chr4 (205-246)||(10167426-10167467)
chr4 (205-246)||(10168857-10168898)
chr4 (205-246)||(13165497-13165538)
chr4 (205-246)||(23204027-23204068)
chr4 (205-246)||(33231390-33231431)
chr4 (205-246)||(54866704-54866745)
chr4 (203-246)||(7707587-7707630)
chr4 (205-243)||(4714020-4714058)
chr4 (205-243)||(23201847-23201885)
chr4 (206-246)||(50546908-50546948)
[»] chr3 (7 HSPs)
chr3 (205-246)||(26887629-26887670)
chr3 (205-246)||(35370914-35370955)
chr3 (203-246)||(27837919-27837962)
chr3 (205-246)||(41263639-41263680)
chr3 (205-246)||(41264727-41264768)
chr3 (205-243)||(53614350-53614388)
chr3 (205-246)||(26886273-26886314)
[»] chr1 (4 HSPs)
chr1 (205-246)||(15234115-15234156)
chr1 (208-246)||(49802969-49803007)
chr1 (205-246)||(15232753-15232794)
chr1 (205-246)||(16963835-16963876)
[»] chr7 (5 HSPs)
chr7 (205-244)||(22538924-22538963)
chr7 (205-246)||(40812687-40812728)
chr7 (205-246)||(11501181-11501222)
chr7 (205-246)||(22335980-22336021)
chr7 (205-246)||(22337444-22337485)
[»] scaffold0472 (1 HSPs)
scaffold0472 (203-243)||(820-860)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 246
Target Start/End: Original strand, 34468761 - 34469000
Alignment:
Q  3 taaggtagaacggtggaggagtgtggtggttccccacggtgttcttattgatctaattaacctaattctttcttgctgattctggttgattgattatcaa 102  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34468761 taaggtagaatggtggaggagtgtggtggtgccccacggtgttcttattgttctaattaacctaattctttcttgctgatcctggttgattgattatcaa 34468860  T
Q  103 ttaatttcatatttattgttgcctctggctggcttgaaattataccagtttgttgcccatcatatagtatcaacgccaattcatctaaattgattgaata 202  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||| |    || |||||||||||||||||||||||||||||||||||||||||||||     
T  34468861 ttaatttcagatttatagttgcctctgactggcttgaaattatacga----gtggcccatcatatagtatcaacgccaattcatctaaattgattgaatt 34468956  T
Q  203 gtttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    | |||||||||||||||||| |||||||||||||||||||||||    
T  34468957 gcttattagatcgtttggtcccttatttaatttcatgttttcat 34469000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 6030606 - 6030647
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  6030606 ttattagatcgtttggtcccttatttaatttcatgttttcat 6030647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 1085501 - 1085460
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  1085501 ttattagattgtttggtcccttatttaatttcatgttttcat 1085460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 18615517 - 18615558
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  18615517 ttattagatcgtttggtcccttatttaatttcatattttcat 18615558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 29219386 - 29219427
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  29219386 ttattagatcgtttggtcctttatttaatttcatgttttcat 29219427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 29220991 - 29220950
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  29220991 ttattagatcgtttggtcccttatttaatttcatattttcat 29220950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 29332685 - 29332726
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  29332685 ttattagatcgtttggtcctttatttaatttcatgttttcat 29332726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 29334290 - 29334249
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  29334290 ttattagatcgtttggtcccttatttaatttcatattttcat 29334249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 44192561 - 44192520
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  44192561 ttattagattgtttggtcccttatttaatttcatgttttcat 44192520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 1082989 - 1083030
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||| ||||||||||| ||||||||||||||| |||||||    
T  1082989 ttattatatcgtttggtcccttatttaatttcatattttcat 1083030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 18617121 - 18617080
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||| |||||||  ||||||||||||||||||||||    
T  18617121 ttattagatcatttggtcctttatttaatttcatgttttcat 18617080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 13116331 - 13116372
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  13116331 ttattagatcgtttggtcccttatttaatttcatgttttcat 13116372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 13117748 - 13117707
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  13117748 ttattagatcgtttggtcccttatttaatttcatgttttcat 13117707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 42098564 - 42098605
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  42098564 ttattagatcgtttggtcccttatttaatttcatgttttcat 42098605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 17338042 - 17338083
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  17338042 ttattaaatcgtttggtcccttatttaatttcatgttttcat 17338083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 17339664 - 17339623
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  17339664 ttattagatcgtttggtcccttatttaatttcatattttcat 17339623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 42100221 - 42100180
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  42100221 ttattagatcgtttgatcccttatttaatttcatgttttcat 42100180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 2688039 - 2687998
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  2688039 ttattagatcgtttggtcccttatttaatttcatgttttcat 2687998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 29722662 - 29722705
Alignment:
Q  203 gtttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  29722662 gtttattagatcatttggtcccttatttaatttcatgttttcat 29722705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 5187737 - 5187696
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  5187737 ttattagattgtttggtcccttatttaatttcatgttttcat 5187696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 6701381 - 6701422
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  6701381 ttattagatcgtttggtcccttatttaatttcatattttcat 6701422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 6702985 - 6702944
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  6702985 ttattagatcgtttggtcccttatttaatttcatattttcat 6702944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 17839254 - 17839213
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  17839254 ttattagatcgtttggtcccttatttaatttcttgttttcat 17839213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 32507141 - 32507100
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  32507141 ttattagattgtttggtcacttatttaatttcatgttttcat 32507100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 12256699 - 12256660
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttc 244  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  12256699 ttattagattgtttggtcccttatttaatttcatgttttc 12256660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 5186569 - 5186610
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||| |||| || |||||||||||||||||||||||    
T  5186569 ttattagatcatttgatcccttatttaatttcatgttttcat 5186610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 17837617 - 17837658
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||  |||||||||    
T  17837617 ttattagatcgtttggtcccttatttaatttattgttttcat 17837658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 18346865 - 18346824
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||| ||||||| ||||||||||||||| |||||||    
T  18346865 ttattagatcatttggtcccttatttaatttcatattttcat 18346824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 23392215 - 23392256
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||| ||||||| ||||||||||||| |||||||||    
T  23392215 ttattagatcatttggtcccttatttaatttcgtgttttcat 23392256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 23397469 - 23397428
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||| ||||||| ||||||||||||| |||||||||    
T  23397469 ttattagatcatttggtcccttatttaatttcgtgttttcat 23397428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 29380192 - 29380233
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||| ||||||| ||||||||||||| |||||||||    
T  29380192 ttattagatcatttggtcccttatttaatttcttgttttcat 29380233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 29381845 - 29381804
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||| | |||||||    
T  29381845 ttattagatcgtttggtcccttatttaatttcttattttcat 29381804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 30910742 - 30910783
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  30910742 ttattagatcgtttggtcccttatttaatttcatgttttcat 30910783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 33174075 - 33174034
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  33174075 ttattagatcgtttggtcccttatttaatttcatgttttcat 33174034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 30912277 - 30912236
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  30912277 ttattagatcgtttagtcccttatttaatttcatgttttcat 30912236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 10167426 - 10167467
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  10167426 ttattagatcgtttggtcccttatttaatttcatgttttcat 10167467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 10168898 - 10168857
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  10168898 ttattagatcgtttggtccattatttaatttcatgttttcat 10168857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 13165497 - 13165538
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  13165497 ttattagatcgtttggtccattatttaatttcatgttttcat 13165538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 23204068 - 23204027
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  23204068 ttattagatcgtttggtcccttatttaatttcatattttcat 23204027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 33231390 - 33231431
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  33231390 ttattagatcatttggtcccttatttaatttcatgttttcat 33231431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 54866745 - 54866704
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  54866745 ttattagatcgtttggtcccttatttaatttcatattttcat 54866704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 7707587 - 7707630
Alignment:
Q  203 gtttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||    
T  7707587 gtttattagatcttttagtcccttatttaatttcatgttttcat 7707630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 4714020 - 4714058
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgtttt 243  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  4714020 ttattagatcgtttggtcccttatttaatttcatatttt 4714058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 23201847 - 23201885
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgtttt 243  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  23201847 ttattagattgtttggtcccttatttaatttcatgtttt 23201885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 50546908 - 50546948
Alignment:
Q  206 tattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||| ||||||| ||||||||||||||||| |||||    
T  50546908 tattagatcatttggtcccttatttaatttcatgtcttcat 50546948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 26887670 - 26887629
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  26887670 ttattagatcgtttggtcccttatttaatttcatgttttcat 26887629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 35370914 - 35370955
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  35370914 ttattagatcgtttggtcccttatttaatttcatgttttcat 35370955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 27837919 - 27837962
Alignment:
Q  203 gtttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||||||||||| || |||||||||||||||||||||||    
T  27837919 gtttattagatcgtttgatcccttatttaatttcatgttttcat 27837962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 41263639 - 41263680
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  41263639 ttattagatcgtttggtcccttatttaatttcatattttcat 41263680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 41264768 - 41264727
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  41264768 ttattagattgtttggtcccttatttaatttcatgttttcat 41264727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 53614388 - 53614350
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgtttt 243  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  53614388 ttattagatcgtttggtcccttatttaatttcttgtttt 53614350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 26886273 - 26886314
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||| |||||||| ||||||||||||||| |||||||    
T  26886273 ttattagattgtttggtcccttatttaatttcatattttcat 26886314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 15234156 - 15234115
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  15234156 ttattagatcgtttggtcccttatttaatttcatgttttcat 15234115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 49803007 - 49802969
Alignment:
Q  208 ttagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  49803007 ttagatcgtttggtcccttatttaatttcatgttttcat 49802969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 15232753 - 15232794
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  15232753 ttattagatcatttggtcccttatttaatttcatgttttcat 15232794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 16963835 - 16963876
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  16963835 ttattagatcgtttggtcttttaattaatttcatgttttcat 16963876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 22538963 - 22538924
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttc 244  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  22538963 ttattagatcgtttggtcccttatttaatttcatgttttc 22538924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 40812728 - 40812687
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  40812728 ttattagatcgtttgatcccttatttaatttcatgttttcat 40812687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 11501181 - 11501222
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||||||||||||  ||| ||||||||||||||||||    
T  11501181 ttattagatcgtttggtcctttaattaatttcatgttttcat 11501222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 22335980 - 22336021
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    |||||||||| ||||||| ||||||||||||| |||||||||    
T  22335980 ttattagatcttttggtcccttatttaatttcgtgttttcat 22336021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 22337485 - 22337444
Alignment:
Q  205 ttattagatcgtttggtctcttatttaatttcatgttttcat 246  Q
    ||||||||| |||||||| |||||||| ||||||||||||||    
T  22337485 ttattagattgtttggtcccttatttagtttcatgttttcat 22337444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 860 - 820
Alignment:
Q  203 gtttattagatcgtttggtctcttatttaatttcatgtttt 243  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  860 gtttattagatcgtttggtcctttatttaatttcatgtttt 820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University