View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_60 (Length: 250)
Name: NF11537_low_60
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13008591 - 13008829
Alignment:
| Q |
1 |
catatgctttacacttatatagcctttagtgcattatgagaatgaaccgtttcacacctttaaatgcaaacttaattgacttgctttattctcttcagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
13008591 |
catatgctttacacttatatagcctttagtgcattatgagaatgaaccgtttcacacctttaaatgcaaacttaattgacttactttattctctttagtg |
13008690 |
T |
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| Q |
101 |
tggagaatgttaggtttatgacattttttaagattcaatcttaaaatagcaattagatttagttagatgcatgacatttaagtaggtagttgaaggttgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
13008691 |
tggagaatgttaggtttatgacattttttaagattcaatcttaaaatagcaattagattcaattagatgcatgacatttaagtaggtagttgaaggttgg |
13008790 |
T |
|
| Q |
201 |
aatgatacagtgattcttagtttaatacagatggttcat |
239 |
Q |
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| T |
13008791 |
aatgatacagtgatccttagtttaatacagatggttcat |
13008829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 13068926 - 13068798
Alignment:
| Q |
66 |
gcaaacttaattgacttgctttattctcttcagtgtggagaatgttaggtttatgacattttttaagattcaatcttaaaatagcaattagatttagtta |
165 |
Q |
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|||||||||| | ||||||||||| ||| |||||||||||| |||||||| ||||||| ||||| ||||||||||||| || | ||||||||| ||||| |
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| T |
13068926 |
gcaaacttaacttacttgctttatcctcctcagtgtggagactgttaggtgtatgacagttttttagattcaatcttacaaaaaaaattagattcagtta |
13068827 |
T |
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| Q |
166 |
gatgcatgacatttaagtaggtagttgaa |
194 |
Q |
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| T |
13068826 |
ggtgcatgacatttaagtaggtagttgaa |
13068798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 13006240 - 13006301
Alignment:
| Q |
4 |
atgctttacacttatatagcctttagtgcattatgagaatgaaccgtttcacacctttaaat |
65 |
Q |
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|||||||||||||||||| ||||||||||| | |||||| |||| ||| |||| ||||||| |
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| T |
13006240 |
atgctttacacttatatattctttagtgcatgaagagaattaaccatttaacacttttaaat |
13006301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 13136376 - 13136348
Alignment:
| Q |
4 |
atgctttacacttatatagcctttagtgc |
32 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
13136376 |
atgctttacacttatatagcctttagtgc |
13136348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 13162928 - 13162956
Alignment:
| Q |
4 |
atgctttacacttatatagcctttagtgc |
32 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
13162928 |
atgctttacacttatatagcctttagtgc |
13162956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 13205861 - 13205889
Alignment:
| Q |
4 |
atgctttacacttatatagcctttagtgc |
32 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
13205861 |
atgctttacacttatatagcctttagtgc |
13205889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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