View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_63 (Length: 241)
Name: NF11537_low_63
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_63 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 43143335 - 43143113
Alignment:
| Q |
19 |
aataaatatctgtgaagcaccaaaacagttaaaaacataattcagataaatagaattattattattctcattaaacacctaactaaaaatataacagaag |
118 |
Q |
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| T |
43143335 |
aataaatatctgtgaagcaccaaaacagttaaaaacataattcagataaatagaattataattattctcattaaacacctaactaaaaatataacagaag |
43143236 |
T |
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| Q |
119 |
aaacaaaattgaagtaacacctcggggttcttctccatctcacgagtgagcgctccaattgatccaggatgtatcctaacatcgtcatccgaaaacaata |
218 |
Q |
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| T |
43143235 |
aaacaaaaatgaagtaacacctcagggttcttctccatctcacgagtgagcgctccgattgatccaggatgtatcctaacatcgtcatccgaaaacaata |
43143136 |
T |
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| Q |
219 |
catactttgtgtctttgtgcatt |
241 |
Q |
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| T |
43143135 |
catactttgtgtctttgtgcatt |
43143113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 43155203 - 43155076
Alignment:
| Q |
114 |
agaagaaacaaaattgaagtaacacctcggggttcttctccatctcacgagtgagcgctccaattgatccaggatgtatcctaacatcgtcatccgaaaa |
213 |
Q |
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|||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43155203 |
agaagaaacaaaatcaaagtaatacctcagggttcttctccatctcacgagtgagcgctccaattgatccaggatgtatcctaacatcgtcatccaaaaa |
43155104 |
T |
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| Q |
214 |
caatacatactttgtgtctttgtgcatt |
241 |
Q |
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| T |
43155103 |
caatacatactttgtgtctttgtgcatt |
43155076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 33834553 - 33834623
Alignment:
| Q |
152 |
tccatctcacgagtgagcgctccaattgatccaggatgtatcctaacatcgtcatccgaaaacaatacata |
222 |
Q |
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| T |
33834553 |
tccatctcacgagcgagtgcacctattgatccaggatgtaggctcacatcatcatctaaaaacaatacata |
33834623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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