View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_67 (Length: 240)
Name: NF11537_low_67
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_67 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4581537 - 4581766
Alignment:
| Q |
1 |
tgaagtggatatggaatcaacactgcatgtggctttttatcagaaaaatgactcatttctgagttttct------atggtatgtgtatgatttgaggttt |
94 |
Q |
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| T |
4581537 |
tgaagtggatatggaatcaacactgcatgtggctttttatcagaaaaatgactcatttctgagttttcttgtattatagtatgtgtatgacttgaggttt |
4581636 |
T |
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| Q |
95 |
agagataaagggataagccagtgccaacaatacacctacctaacaactctaatcataatgccaaaaaacatgtcatgtgacagcattttaattagtctgt |
194 |
Q |
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| T |
4581637 |
agagataaagggattagccagtgccaacaatacacctacctaacaactctaatcataatgccaaaaaacatgtcatgtgacagcgtttaaattagtctgt |
4581736 |
T |
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| Q |
195 |
agctgaataaaaatctggtgatgaataatg |
224 |
Q |
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| T |
4581737 |
agctgaataaaaatttggtgatgaataatg |
4581766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 4590091 - 4590178
Alignment:
| Q |
138 |
caactctaatcataatgccaa-aaaacatgtcatgtgacagcattttaattagtctgtagctgaataaaaatctggtgatgaataatg |
224 |
Q |
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| T |
4590091 |
caactctagtcataatgccaacaaaacatgtcatatcacagcatttaaattagtctgaagcagatgaaaaatttggtgatgaataatg |
4590178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 4258776 - 4258742
Alignment:
| Q |
6 |
tggatatggaatcaacactgcatgtggctttttat |
40 |
Q |
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| T |
4258776 |
tggatatggaatcaacacagcatgtggctttttat |
4258742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3088268 - 3088309
Alignment:
| Q |
1 |
tgaagtggatatggaatcaacactgcatgtggctttttatca |
42 |
Q |
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| T |
3088268 |
tgaagtggatatggaatcaacacagcatgtggctttttatca |
3088309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 20862415 - 20862355
Alignment:
| Q |
1 |
tgaagtggatatggaatcaacactgcatgtggctttttatcagaaaaatgactcatttctg |
61 |
Q |
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||||||||||||||| | |||||||||||||| ||||| |||| ||||| |||||| |||| |
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| T |
20862415 |
tgaagtggatatggagttaacactgcatgtggttttttctcagcaaaattactcatctctg |
20862355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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