View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_68 (Length: 238)
Name: NF11537_low_68
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_68 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 19123502 - 19123703
Alignment:
| Q |
18 |
gaataatatgacgttgtgtgtgaggtgttttatttgtggaaactatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagacn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123502 |
gaataatatgacgttgtgtgtgaggtgttttatttgtggaaactatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagaca |
19123601 |
T |
|
| Q |
118 |
nnnnnngaatggactgaggaggaaacactgaatcttcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtagga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123602 |
aaaaaagaatggactgaggaggaaacactgaatcttcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtagga |
19123701 |
T |
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| Q |
218 |
cc |
219 |
Q |
| |
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|| |
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| T |
19123702 |
cc |
19123703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 54293132 - 54292931
Alignment:
| Q |
18 |
gaataatatgacgttgtgtgtgaggtgttttatttgtggaaactatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagacn |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54293132 |
gaataatatgacgttgtgtgcgaggtgttttattcgtggaaattatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagacg |
54293033 |
T |
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| Q |
118 |
nnnnnngaatggactgaggaggaaacactgaatcttcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtagga |
217 |
Q |
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| T |
54293032 |
aaaaatgaatggactgagaaggaaacactgaatcttcttgaagctattacgaatttcggtgatgattggaagagggttgctcatcaagttgttggtagga |
54292933 |
T |
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| Q |
218 |
cc |
219 |
Q |
| |
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|| |
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| T |
54292932 |
cc |
54292931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 36753168 - 36753369
Alignment:
| Q |
18 |
gaataatatgacgttgtgtgtgaggtgttttatttgtggaaactatcgaattggtatgagtaatacagaattcaagagagtggagataagcgaggagacn |
117 |
Q |
| |
|
|||||||| || |||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |
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| T |
36753168 |
gaataataggaagttgtgtgcgaggtgtttcattcgtgggaactatcgaattggtatgagtaatacaaaatttaagagagtggagataagtgaggagaca |
36753267 |
T |
|
| Q |
118 |
nnnnnngaatggactgaggaggaaacactgaatcttcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtagga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753268 |
aaaaatgaatggactgaggaggaaacactgaatcttcttgaagctattacaaatttcggggatgattggaagagggtttctcatcaagttgttggtagga |
36753367 |
T |
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| Q |
218 |
cc |
219 |
Q |
| |
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|| |
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|
| T |
36753368 |
cc |
36753369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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