View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_low_71 (Length: 237)

Name: NF11537_low_71
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_low_71
NF11537_low_71
[»] chr1 (13 HSPs)
chr1 (1-224)||(13008375-13008598)
chr1 (6-197)||(13162738-13162929)
chr1 (7-197)||(13095616-13095806)
chr1 (6-197)||(13131045-13131236)
chr1 (6-197)||(13205673-13205862)
chr1 (68-224)||(13214663-13214819)
chr1 (55-196)||(13069024-13069165)
chr1 (103-224)||(13102175-13102296)
chr1 (6-100)||(13136375-13136469)
chr1 (6-105)||(13102456-13102555)
chr1 (6-138)||(30366894-30367024)
chr1 (6-115)||(13067047-13067153)
chr1 (87-159)||(13071507-13071579)
[»] chr6 (1 HSPs)
chr6 (64-150)||(31376759-31376845)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13008598 - 13008375
Alignment:
Q  1 agcatatgtacacaatttatatgcatacatcaaagacacatgcaatttgaaaacacatactttagtaaatctacaatgtccataattcagtgtattggag 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13008598 agcatatgtacacaatttatatgcatgcatcaaagacacatgcaatttgaaaacacatactttagtaaatctacaatgtccataattcagtgtattggag 13008499  T
Q  101 gatttgtagccatcctaatcttcctatacatttactattggagacgcaatagagatgaatttgcaccaattaattggccaataattggtatgctacctgg 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13008498 gatttgtagccatcctaatcttcctatacatctactattggagacgcaatagagatgaatttgcaccaattaattggccaataattggtatgctacctgg 13008399  T
Q  201 gattttgcgtcacctgtccaattt 224  Q
    |||||||| |||||||||||||||    
T  13008398 gattttgcatcacctgtccaattt 13008375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 13162929 - 13162738
Alignment:
Q  6 atgtacacaatttatatgcatacatcaaagacacatgcaatttgaaaacacatactttagtaaatctacaatgtccataattcagtgtattggaggattt 105  Q
    ||||||||| |||| | |||| ||| ||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  13162929 atgtacacattttaaaagcatgcatgaaaaacacatgcaatttgaaaacacacactttagtaaatctataatgtcaataattcagtgtattggaggattt 13162830  T
Q  106 gtagccatcctaatcttcctatacatttactattggagacgcaatagagatgaatttgcaccaattaattggccaataattggtatgctacc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13162829 gtagccatcctaatcttcctatacatttactattggagacgcaatagagatgaatttgtaccaattaattggccaataattggtatgctacc 13162738  T

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Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 13095806 - 13095616
Alignment:
Q  7 tgtacacaatttatatgcatacatcaaagacacatgcaatttgaaaacacatactttagtaaatctacaatgtccataattcagtgtattggaggatttg 106  Q
    |||||||| |||||| |||| ||| |||||||||||||||||| ||||| | ||| || |||| |||||||||| |||||||||||||||||||| |||     
T  13095806 tgtacacattttataagcatgcatgaaagacacatgcaatttgcaaacatacactgtaataaaactacaatgtcaataattcagtgtattggagggtttc 13095707  T
Q  107 tagccatcctaatcttcctatacatttactattggagacgcaatagagatgaatttgcaccaattaattggccaataattggtatgctacc 197  Q
    || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13095706 taaccatcctaatcttcctatacatctactattggagacgcaatagagatgaatttgtaccaattaattggccaataattggtatgctacc 13095616  T

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Target: chr1; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 13131236 - 13131045
Alignment:
Q  6 atgtacacaatttatatgcatacatcaaagacacatgcaatttgaaaacacatactttagtaaatctacaatgtccataattcagtgtattggaggattt 105  Q
    ||||||||| |||||| |||| ||| |||||||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  13131236 atgtacacattttataagcatgcatgaaagacacatgcaatttgcaaacatacactttagtaaaactacaatgtcaataattcagtgtattggaggattt 13131137  T
Q  106 gtagccatcctaatcttcctatacatttactattggagacgcaatagagatgaatttgcaccaattaattggccaataattggtatgctacc 197  Q
    ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| ||  || |||||||||||||||||||||||| |||||    
T  13131136 gtaaccatcctaatcttcctatacatctactattcgagacgcaatagagatgaacttttactaattaattggccaataattggtatactacc 13131045  T

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Target: chr1; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 13205862 - 13205673
Alignment:
Q  6 atgtacacaatttatatgcatacatcaaagacacatgcaatttgaaaacacatactttagtaaatctacaatgtccataattcagtgtattggaggattt 105  Q
    ||||||||| |||||| |||| ||| ||| ||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||     
T  13205862 atgtacacattttataagcatgcatgaaaaacacatgcaatttgaaaacaca--ctttagtaaatctacaatgtcaataattcagtgtattggaggatta 13205765  T
Q  106 gtagccatcctaatcttcctatacatttactattggagacgcaatagagatgaatttgcaccaattaattggccaataattggtatgctacc 197  Q
     ||||||| ||||||||||||||||| ||||| ||||||||||||||| ||| |  |  ||||||||||| |||||||||||||||||||||    
T  13205764 ctagccattctaatcttcctatacatctactactggagacgcaatagatatggaagtttaccaattaatttgccaataattggtatgctacc 13205673  T

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Target: chr1; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 68 - 224
Target Start/End: Complemental strand, 13214819 - 13214663
Alignment:
Q  68 aatctacaatgtccataattcagtgtattggaggatttgtagccatcctaatcttcctatacatttactattggagacgcaatagagatgaatttgcacc 167  Q
    ||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||  ||||||||||| |||||||||||||| ||| |||    
T  13214819 aatctacaatgtcaataattcagtgtattggaggatttctagcaatcctaatcttgctatacatccactattggagatgcaatagagatgaaattgtacc 13214720  T
Q  168 aattaattggccaataattggtatgctacctgggattttgcgtcacctgtccaattt 224  Q
    ||| ||||||||||||||||||||||||||   ||||||||||| ||||||||||||    
T  13214719 aatcaattggccaataattggtatgctaccgacgattttgcgtcccctgtccaattt 13214663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 13069024 - 13069165
Alignment:
Q  55 acatactttagtaaatctacaatgtccataattcagtgtattggaggatttgtagccatcctaatcttcctatacatttactattggagacgcaatagag 154  Q
    ||||| ||||||||||| | ||||| ||  ||||||||| |||||||||| | |||||||||||||||| |||||||  |||||||||||||||||||||    
T  13069024 acatattttagtaaatcgaaaatgtgcactattcagtgtgttggaggattggcagccatcctaatcttcttatacatccactattggagacgcaatagag 13069123  T
Q  155 atgaatttgcaccaattaattggccaataattggtatgctac 196  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  13069124 atgaatttgtaccaattaattggccaatatttggtatgctac 13069165  T

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Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 13102296 - 13102175
Alignment:
Q  103 tttgtagccatcctaatcttcctatacatttactattggagacgcaatagagatgaatttgcaccaattaattggccaataattggtatgctacctggga 202  Q
    ||||||||||||||||||||||||||||| |||| | ||||||| |||||||||||| ||  |||||| |||||||||||||||||||||||||| | |     
T  13102296 tttgtagccatcctaatcttcctatacatctactgtcggagacgtaatagagatgaaattttaccaatcaattggccaataattggtatgctaccagcgc 13102197  T
Q  203 ttttgcgtcacctgtccaattt 224  Q
    ||||||||||||||||||||||    
T  13102196 ttttgcgtcacctgtccaattt 13102175  T

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Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 13136375 - 13136469
Alignment:
Q  6 atgtacacaatttatatgcatacatcaaagacacatgcaatttgaaaacacatactttagtaaatctacaatgtccataattcagtgtattggag 100  Q
    ||||||||| |||||| |||| ||| ||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||    
T  13136375 atgtacacattttataagcatgcatgaaaaacacattcaatttgaaaacacacactttagtaaatctacaatgtcaataattcagtgtcttggag 13136469  T

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Target: chr1; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 13102555 - 13102456
Alignment:
Q  6 atgtacacaatttatatgcatacatcaaagacacatgcaatttgaaaacacatactttagtaaatctacaatgtccataattcagtgtattggaggattt 105  Q
    ||||||||| |||||| |||| ||| |||||||||||||||||  ||||| |  ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  13102555 atgtacacattttataagcatgcatgaaagacacatgcaatttataaacataccctttagtaaatcttcaatgtctataattcagtgtattggaggattt 13102456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 30366894 - 30367024
Alignment:
Q  6 atgtacacaatttatatgcatacatcaaagacacatgcaatttgaaaacacatactttagtaaatctacaatgtccataattcagtgtattggaggattt 105  Q
    ||||||||| |||||| ||||||||| || ||||||||||||||||| ||||  ||  ||||||||||||||||  || ||||| |||||||||||||||    
T  30366894 atgtacacattttataagcatacatctaaaacacatgcaatttgaaa-cacac-ctaaagtaaatctacaatgtgtatgattcaatgtattggaggattt 30366991  T
Q  106 gtagccatcctaatcttcctatacatttactat 138  Q
    ||||| |||||  ||||| | ||||| ||||||    
T  30366992 gtagctatcctcttcttcatttacatctactat 30367024  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 13067047 - 13067153
Alignment:
Q  6 atgtacacaatttatatgcatacatcaaagacacatgcaatttgaaaacacatactttagtaaatctacaatgtccataattcagtgtattggaggattt 105  Q
    ||||||||| |||||| |||||||||| |||||  ||||| |  |||   |||||||  |||||||| |||||| ||  ||||||||||||| |||||||    
T  13067047 atgtacacattttataagcatacatcatagacaattgcaagtcaaaa---catacttaggtaaatctgcaatgtgcaagattcagtgtattgcaggattt 13067143  T
Q  106 gtagccatcc 115  Q
    ||||||||||    
T  13067144 gtagccatcc 13067153  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 13071507 - 13071579
Alignment:
Q  87 tcagtgtattggaggatttgtagccatcctaatcttcctatacatttactattggagacgcaatagagatgaa 159  Q
    ||||||||||||||||||| ||| ||||||  ||||  |||||||  ||||||||||||| ||||| ||||||    
T  13071507 tcagtgtattggaggatttttaggcatcctcttcttgatatacatccactattggagacgaaatagggatgaa 13071579  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 31376845 - 31376759
Alignment:
Q  64 agtaaatctacaatgtccataattcagtgtattggaggatttgtagccatcctaatcttcctatacatttactattggagacgcaat 150  Q
    ||||||||||||||||  || ||||| |||||||||||||||| ||| |||||  || || | ||||| ||||||||| ||| ||||    
T  31376845 agtaaatctacaatgtttatgattcaatgtattggaggatttgcagctatcctcttcgtcatttacatctactattggcgacacaat 31376759  T

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