View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_77 (Length: 227)
Name: NF11537_low_77
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 48702654 - 48702457
Alignment:
| Q |
14 |
cacagaggagggtaagaaaaccaaacaagtgaaagacactcaccaccccaacaataaccagcagctccaatagcagaaacacctttactttttaaggctt |
113 |
Q |
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| T |
48702654 |
cacagaggagggtaagaaaaccaaacaagtgaaagacactcaccaccccaacaataaccagcagctccaatagcagaaacacctttactttttaaggctt |
48702555 |
T |
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| Q |
114 |
caattattggttgggaagcttcaaaacctttgtcctgtaaatgtaatatattcatagacaagtcacgatttttgtacacccgaattgaaacaatctat |
211 |
Q |
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| T |
48702554 |
caattattggttgggaagcttcaaaacctttgtcctgtaaatgtaatatattcatagacaagtcacgatttttgtacacccgaattgaaacaatctat |
48702457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 48715073 - 48714930
Alignment:
| Q |
19 |
aggagggtaagaaaaccaaacaagtgaaa-gacactcaccaccccaacaataaccagcagctccaatagcagaaacacctttactttttaaggcttcaat |
117 |
Q |
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| T |
48715073 |
aggagggtaagaaaaccaaacaagttaaaagacactcaccaccccaacaaaatccagcagctccaatagtagaaatacctttacttttcaaggcttcaat |
48714974 |
T |
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| Q |
118 |
tattggttgggaagcttcaaaacctttgtcctgtaaatgtaata |
161 |
Q |
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| T |
48714973 |
tatgggttgtgaaacttcaaaacctgtctcctataaatataata |
48714930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 48688340 - 48688241
Alignment:
| Q |
50 |
cactcaccaccccaacaataaccagcagctccaatagcagaaacacctttactttttaaggcttcaattattggttgggaagcttcaaaacctttgtcct |
149 |
Q |
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| T |
48688340 |
cactcaccaccccaacaaaatccagcagccccgacagatgaaacacctttactttttatggcttcaattatgggttttgcatcttcaaaacctttgtcct |
48688241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 32150407 - 32150447
Alignment:
| Q |
80 |
ccaatagcagaaacacctttactttttaaggcttcaattat |
120 |
Q |
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| T |
32150407 |
ccaatagcagaaacacctttactttttaaggcttcaattat |
32150447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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