View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_8 (Length: 623)
Name: NF11537_low_8
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Original strand, 30886525 - 30887024
Alignment:
| Q |
16 |
atgaatcacatacagaatttcacatttaactctgaaataaagtatactggtaagagaaacaagcagtttatacctctccagtaaattgcacagttgtgaa |
115 |
Q |
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| T |
30886525 |
atgaatcacatacagaatttcacatttaactctgaaataaagtatactggtaagagaaacaagcagtttatacctctccagtaaattgcacagttgtgaa |
30886624 |
T |
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| Q |
116 |
tttattgtcaatcccagatgtaccttcaaaaacctaggcaatggtacaaaaagctaaattaatataagccaagtttttgttattagaaccaatacaacaa |
215 |
Q |
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| T |
30886625 |
tttattgtcaatcccagatgtaccttcaaaaacctaggcaatggtacaaaaagctaaattaatataagccaagtttttgttattagaaccaacacaacaa |
30886724 |
T |
|
| Q |
216 |
catgaacaaagtaaagacaacaccaaaggcttttacttaacaactcataaaatcatagaaacatgaaaatcttataaatttcggttacatgttgaatata |
315 |
Q |
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| T |
30886725 |
catgaacaaagtaaagacaacaccaaaggcttttacttaacaactcataaaatctgagaaacatgaaaatcttataaatttcggttacatgttgaatata |
30886824 |
T |
|
| Q |
316 |
gaggtaattatctcctcataatatatccaactacatatgattccgaatgcaccatagagttgggcagtatacactgactcacctgaacaacagctttttc |
415 |
Q |
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| T |
30886825 |
gaggtaattatctcctcataatatatccaactacatatgattccgaatgcaccatagagttgggcagtatacactgactcacctgaacaacagctttttc |
30886924 |
T |
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| Q |
416 |
gccatcaacttctagaacttgtccacgcctagtcgttccatctcctaaccgaatattaacaatctcttgatacttaggtccctgaatcagttaatcatta |
515 |
Q |
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| T |
30886925 |
gccatcaacttctagaacttgtccacgcctagtcgttccatctcctaaccgaatattaacaatctcttgatacttaggtccctgaatcagttaatcatta |
30887024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 546 - 607
Target Start/End: Original strand, 30887055 - 30887116
Alignment:
| Q |
546 |
tatgcagcaagcatatcaaaattgaaagagacggactaatataagtatatggtgattaaatt |
607 |
Q |
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| T |
30887055 |
tatgcagcaagcatatcaaaattgaaagagacggattaatataagtatatggtgattaaatt |
30887116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 393 - 507
Target Start/End: Complemental strand, 51174622 - 51174508
Alignment:
| Q |
393 |
ctcacctgaacaacagctttttcgccatcaacttctagaacttgtccacgcctagtcgttccatctcctaaccgaatattaacaatctcttgatacttag |
492 |
Q |
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| T |
51174622 |
ctcacctgaacaacagccttttcgccatcaacctcgagaacttgtccacgccgggtagttccatcgcctaaacgaatattgacaatctcttgatatttgg |
51174523 |
T |
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| Q |
493 |
gtccctgaatcagtt |
507 |
Q |
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| T |
51174522 |
gtccctgaagcagtt |
51174508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 51174963 - 51174899
Alignment:
| Q |
86 |
tacctctccagtaaattgcacagttgtgaatttattgtcaatcccagatgtaccttcaaaaacct |
150 |
Q |
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||||||||||||||| || || || || |||||||||||||||||||||||||||||||| |||| |
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| T |
51174963 |
tacctctccagtaaactgtacggtcgtaaatttattgtcaatcccagatgtaccttcaaatacct |
51174899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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