View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_low_83 (Length: 201)
Name: NF11537_low_83
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 49149867 - 49149697
Alignment:
| Q |
18 |
aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccacatacctgaaatttacga |
117 |
Q |
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| T |
49149867 |
aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccacatacctgaaatttacga |
49149768 |
T |
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| Q |
118 |
ttggcaaggtataatggatattgaaaagggtaccgtctctcgtttggaatgccatacaaccaattcttctc |
188 |
Q |
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| T |
49149767 |
ttggcaaggtataatggatattgaaaagggtaccgtctctcgtttggaatgccatacaaccaattcttctc |
49149697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 4235786 - 4235703
Alignment:
| Q |
18 |
aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccaca |
101 |
Q |
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| T |
4235786 |
aggtatatccttaaaaggactcattagggttataatggacttagaatcatctactaatgcaaaccaaccatggctagagccaca |
4235703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 49145352 - 49145178
Alignment:
| Q |
18 |
aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccacatacctgaaatttac-- |
115 |
Q |
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|||| |||||||||||||| ||||||| |||| | ||||| |||| |||||| ||||||| ||||||||||||||||||||| | | || ||||| |
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| T |
49145352 |
aggtgtatccttaaaaggactcattagggttataatggacttggaatcatctacaaatgcaaaccaaccatggctagagccacagagcgaaagtttacta |
49145253 |
T |
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| Q |
116 |
-gattggcaaggtataatggatattgaaaagggtaccgtctctcgtttggaatgccatacaaccaattcttctct |
189 |
Q |
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| T |
49145252 |
ttattagcatggcataactgaaattgaaaagggtgccatcttttgtttagaataccatacaaccaattcttctct |
49145178 |
T |
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