View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_105 (Length: 240)
Name: NF11538_high_105
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_105 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33531574 - 33531796
Alignment:
| Q |
1 |
catccgaactccagattaccagggtcacttcccctcttaattcagaggattaagacaggtatactatttaattgagtgaagcatattaagttattcatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531574 |
catccgaactccagattaccagggtcacttcccctcttaattcagaggattaagaaaggtatactatttaattgagtgaagcatattaagttattcatca |
33531673 |
T |
|
| Q |
101 |
ttaacaagtacctgaagtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531674 |
ttaacaagtacctgaagtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctg |
33531773 |
T |
|
| Q |
201 |
aaaccttcccaaaccaatcaaag |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33531774 |
aaaccttcccaaaccaatcaaag |
33531796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 26209619 - 26209734
Alignment:
| Q |
108 |
gtacctgaagtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaacctt |
207 |
Q |
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||||||||| |||||||| |||||||| | |||||||| ||||||||| || | || ||||| |||||||||||||| |||||| | ||||||||| |
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| T |
26209619 |
gtacctgaaatatattgttgccaaacgattgtgagctctgttataagaaggatccaaccgaatagattcctcacactcaataattgcttcttgaaacctt |
26209718 |
T |
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| Q |
208 |
cccaaaccaatcaaag |
223 |
Q |
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|| || |||||||||| |
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| T |
26209719 |
cctaatccaatcaaag |
26209734 |
T |
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