View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_high_12 (Length: 644)

Name: NF11538_high_12
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_high_12
NF11538_high_12
[»] chr5 (7 HSPs)
chr5 (169-401)||(27561954-27562186)
chr5 (170-399)||(36669011-36669239)
chr5 (10-170)||(27562234-27562394)
chr5 (10-170)||(36669288-36669449)
chr5 (430-625)||(36668667-36668870)
chr5 (430-570)||(27563153-27563291)
chr5 (589-628)||(27561791-27561830)
[»] chr1 (3 HSPs)
chr1 (169-394)||(29411503-29411725)
chr1 (422-618)||(29411206-29411410)
chr1 (10-170)||(29411773-29411938)
[»] chr8 (2 HSPs)
chr8 (10-166)||(26928772-26928930)
chr8 (202-284)||(26928621-26928703)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 169 - 401
Target Start/End: Complemental strand, 27562186 - 27561954
Alignment:
Q  169 agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27562186 agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc 27562087  T
Q  269 ttttcatgtatgtttatttccagaatgaactaaatgatgataatatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatc 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  27562086 ttttcatgtatgtttatttccagaatgaactaaatgatgataatatgtacacacttcccgagtatactctatggaaaatgatcaacttcaacattggatc 27561987  T
Q  369 gctgaattggatagatataaatcattaacagtg 401  Q
    |||||||||||||||||||||||||||||||||    
T  27561986 gctgaattggatagatataaatcattaacagtg 27561954  T

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Target: chr5; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 170 - 399
Target Start/End: Complemental strand, 36669239 - 36669011
Alignment:
Q  170 gaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatct 269  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| |||||||||| |||||||||||    
T  36669239 gaacttcaggtttgtaaatttgaactatctgcaatggttttgtcattatttcttcagtaattgagatgcattgactc-agggttccatctaaaagtatct 36669141  T
Q  270 tttcatgtatgtttatttccagaatgaactaaatgatgataa-tatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatc 368  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||     
T  36669140 tttcatgtatgtttatt-ccagaatgaactaaatgatgataagtatgtacgcacttcccgagtatactctttggcaaaggatcaacttcaacattggatt 36669042  T
Q  369 gctgaattggatagatataaatcattaacag 399  Q
    |||||||||||||||| ||||||||| ||||    
T  36669041 gctgaattggatagatttaaatcattgacag 36669011  T

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Target: chr5; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 27562394 - 27562234
Alignment:
Q  10 gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  27562394 gcagagagagccatggttttgtctgtgttgaagaattcaattgaggaagccaaggttttattttttgcgatttctttccttctgtcattcatttgtcgat 27562295  T
Q  110 tctgtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag 170  Q
    ||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  27562294 tctgtctgagatatatgcttggctgatgtcatagatagtgaattctgatcgtctttctgag 27562234  T

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Target: chr5; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 36669449 - 36669288
Alignment:
Q  10 gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat 109  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||  | |||||| ||||| | ||||||||||||||||||||||||||||||||    
T  36669449 gcagagagagctatgggtttgtctgagttgaagaattcaattgaggaagtgaaggttttattttt-gtgatttctttccttctgtcattcatttgtcgat 36669351  T
Q  110 tct--gtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag 170  Q
    |||  || | |||| ||||||| |||||| |||||||||||||||||||||||||||||||||    
T  36669350 tctctgtctaagatttatgcttggctgatatcatagatagtgaatgctgatcgtctttctgag 36669288  T

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Target: chr5; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 430 - 625
Target Start/End: Complemental strand, 36668870 - 36668667
Alignment:
Q  430 tttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaattctgactc 529  Q
    |||||||| |||||| ||||   ||||| |||||||||||||| ||||  ||||| |||| ||| |||||||||| |||||||||||||| |||||||||    
T  36668870 tttaggctagcaggactaacattgcaaaacgggagaaggaattgaattctaaattggagtctgcggttaatgcaaggcatatccatgacatttctgactc 36668771  T
Q  530 tatgactgatgagctcaagattcagttgcaaaagtgtatta--------aatgatgttgaaatcaaggtggaagaggccaaagaggatactggtctgtat 621  Q
    || ||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||| |||||||||||||| | |||| |||||||| |    
T  36668770 taggactgatgagctcaagattcagttgcaaaagtgtattaatgaaaggaatgatcttgaaatcaagatggaagaggccaaacaagatattggtctgtgt 36668671  T
Q  622 atca 625  Q
    ||||    
T  36668670 atca 36668667  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 430 - 570
Target Start/End: Original strand, 27563153 - 27563291
Alignment:
Q  430 tttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaattctgactc 529  Q
    ||||||||||||||  ||||  | ||||  ||||||||||| | ||||||||||| |||| ||||| |||||||| || ||||| ||||||||||||  |    
T  27563153 tttaggctggcagggctaacatctcaaaatgggagaaggaactgaatttgaaattggagtctgctgataatgcaaggcgtatccttgacaattctga--c 27563250  T
Q  530 tatgactgatgagctcaagattcagttgcaaaagtgtatta 570  Q
    |||||| ||||  ||| || |||||||||| || |||||||    
T  27563251 tatgaccgatggcctcgagcttcagttgcagaaatgtatta 27563291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 589 - 628
Target Start/End: Complemental strand, 27561830 - 27561791
Alignment:
Q  589 gtggaagaggccaaagaggatactggtctgtatatcacct 628  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27561830 gtggaagaggccaaagaggatactggtctgtatatcacct 27561791  T

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Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 169 - 394
Target Start/End: Complemental strand, 29411725 - 29411503
Alignment:
Q  169 agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc 268  Q
    |||||||||||||||| |||||||||||||||||||| | || |||||||||||||||||| ||| |  |||| | | ||||||||||||||||||||||    
T  29411725 agaacttcaggtttgtcaatttgagctatctgcaatggtgttatcattatttcttgagtaattgaaacacattcattatagggttccatgtaaaagtatc 29411626  T
Q  269 ttttcatgtatgtttatttccagaatgaactaaatgatgataa-tatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggat 367  Q
    |||||     ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||| ||| |||||    
T  29411625 ttttc----gtgtttatttccagaatgaactaaatgatgataagtatgtacgcaattcccgagtatactctttggcaaatgatcaacttcaacactggat 29411530  T
Q  368 cgctgaattggatagatataaatcatt 394  Q
     ||||||||||| ||||||||||||||    
T  29411529 tgctgaattggacagatataaatcatt 29411503  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 422 - 618
Target Start/End: Complemental strand, 29411410 - 29411206
Alignment:
Q  422 aatgcaactttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaat 521  Q
    ||||||| |||||||||||||| |||||  | |||| ||||||||||| || || |||||||| |||| |||||||||||||| ||||||||||||||||    
T  29411410 aatgcaattttaggctggcagggttaacgtctcaaaacgggagaaggagttgaagttgaaattggagtctgctgttaatgcaaggcatatccatgacaat 29411311  T
Q  522 tctgactctatgactgatgagctcaagattcagttgcaaaagtgtatta--------aatgatgttgaaatcaaggtggaagaggccaaagaggatactg 613  Q
    |||||||||| || ||||||||||||| |||| ||||| ||||||||||        |||||| ||||||| | | |||||||||||||| |||||||||    
T  29411310 tctgactctaggattgatgagctcaagcttcaattgcagaagtgtattattgaaaagaatgatcttgaaattacgatggaagaggccaaacaggatactg 29411211  T
Q  614 gtctg 618  Q
    |||||    
T  29411210 gtctg 29411206  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 29411938 - 29411773
Alignment:
Q  10 gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgattt-ctttccttctgtcattcattt--gtc 106  Q
    ||||| || |||||||||||||| | ||||||| | |||||||||||||||| |||||   |||||| ||||| |||||||||   |||||||||  |||    
T  29411938 gcagatagggccatgggtttgtccgagttgaagcactcaattgaggaagccaaggtttaactttttgtgattttctttccttccaccattcatttttgtc 29411839  T
Q  107 gattct--gtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag 170  Q
    ||||||  || | |||| |||| || ||||||||||||||| ||||||||||||||||||||||||    
T  29411838 gattctttgtctaagatgtatgtttggctgatgtcatagatcgtgaatgctgatcgtctttctgag 29411773  T

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Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 26928930 - 26928772
Alignment:
Q  10 gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat 109  Q
    ||||||||||||||   |||||| |  ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  26928930 gcagagagagccattactttgtccgacttgaaaaattcaattgaggaagccaaggttttattttttgtgatttctttccttctctcattcatttgtcgat 26928831  T
Q  110 --tctgtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttc 166  Q
      ||||| | |||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  26928830 tctctgtctaagatatatgcttggctgatgtcacagatagtgaatgatgatcgtctttc 26928772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 26928703 - 26928621
Alignment:
Q  202 aatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgttta 284  Q
    |||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||| |||| ||||||    
T  26928703 aatggttttgtcattatttcttgagtaatttagatgcatatactctagggttccatgtaaaagtatatttttatgtgtgttta 26928621  T

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