View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_122 (Length: 220)
Name: NF11538_high_122
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_122 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 3800735 - 3800866
Alignment:
| Q |
73 |
tgaaacccatttaattccttctttaattcattcttctcttccttcttcaacatgactcagagatctgtgaaacctatttctcaattgtgtgatttacaac |
172 |
Q |
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| T |
3800735 |
tgaaacccatttaattccttctttaattcattcttctcttccttcttgaacatgactcagagatctgtgaaacttatttctcaactgtgtgatttacaac |
3800834 |
T |
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| Q |
173 |
actgacatctcttttttaatgaaattacatca |
204 |
Q |
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| T |
3800835 |
actgacatctcttttttaatgaaattacatca |
3800866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3800727 - 3800660
Alignment:
| Q |
1 |
ttttgtgaatttcatattgaagaatgaagagaa-ggattggaacaatttaggttgaatgggaacaaac |
67 |
Q |
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| T |
3800727 |
ttttgtgaatttcatattgaagaaggaagagaagggattggaacaattaaggttgaatgggaacaaac |
3800660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 3990181 - 3990298
Alignment:
| Q |
94 |
tttaattcattcttctcttccttcttcaacatgactcagagatctgtgaaacctatttctcaattgtgtgatttacaacactgacatctcttttttaatg |
193 |
Q |
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| T |
3990181 |
tttaattcattcttctcttccttcttcaacatgactcagagatctgtgaaacctatttctcaattgtgtgatttacaacactaacatctc-tttttaatg |
3990279 |
T |
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| Q |
194 |
aaattacatcacctatgct |
212 |
Q |
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| T |
3990280 |
aaattacattacctatgct |
3990298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 3990164 - 3990093
Alignment:
| Q |
1 |
ttttgtgaatttcatattgaagaatgaagagaagg-attggaacaatttaggttgaatgggaacaaactctt |
71 |
Q |
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| T |
3990164 |
ttttgtgaatttcatatcgaagaatgaagagaagggattggaacaatttaggttgaatgggaacaaactctt |
3990093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 25066725 - 25066650
Alignment:
| Q |
96 |
taattcattcttctcttccttcttcaacatgactcagagatctgtgaaacctatttctcaattgtgtgatttacaa |
171 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |
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| T |
25066725 |
taattccttcttctcttccttcttcaacatgactcagaaatctatgaaacccatttctcaattgtgtgatttacaa |
25066650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 25066744 - 25066811
Alignment:
| Q |
1 |
ttttgtgaatttcatattgaagaatgaagag-aaggattggaacaatttaggttgaatgggaacaaac |
67 |
Q |
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|||||||||||||| ||||||||| |||||| |||||||||||||||||||||| |||| ||||||| |
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| T |
25066744 |
ttttgtgaatttcagattgaagaaggaagagaaaggattggaacaatttaggttaaatgacaacaaac |
25066811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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