View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_16 (Length: 613)
Name: NF11538_high_16
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Original strand, 38474649 - 38475033
Alignment:
| Q |
13 |
atcaaaatcttcattaatacaacaattttgcattagcagttctacttttgcttctttatttttcaattattttttcgcccaacctcttcatatagttgtt |
112 |
Q |
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| T |
38474649 |
atcaaaatcttcattaatacaacaattttgcattagcagttctacttttgcttctttatttatcaattattttttcgcccaacctcttcatatagttgtt |
38474748 |
T |
|
| Q |
113 |
ttcccgtaattaacaacgtacaagacttgacatctcacatatattatgatcaaactgtactaattaaagcctctatacattgaactttatgtctaagcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38474749 |
ttcccgtaattaacaacgtacaagacttgacatctcacatatattatgattaaactgtactaattaaagcctc--tacattgaactttatgtctaagcaa |
38474846 |
T |
|
| Q |
213 |
aatatattgtttattgggttatgactaatctcaatgatcgttaaagtgtactcaacattc---ttgatgatagagttgcatcatcaaagtcagttgtaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
38474847 |
aatatattgtttattgggttatgactaatctcaatgatcgttaaagtgtactcaacattctttttgatgatagagttgcatcatcaaagtcagttgtcac |
38474946 |
T |
|
| Q |
310 |
atatatttaaagtattgaagattgctgaacctgaatttttagggtattgttgcatttacgaccaagggaggagctacatagtagggg |
396 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| |
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| T |
38474947 |
atgtatttaaagtattgaagattgctgaacctgaatttttagggtattgttgcatttacaaccaagggcagagctacgtagtagggg |
38475033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 411 - 523
Target Start/End: Original strand, 38475445 - 38475554
Alignment:
| Q |
411 |
cctgaacttaacaaaattacacatatacccccatattatttgtactttgaacccctggaattaattttttgcaccttgacccaagacagtctaacactca |
510 |
Q |
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| T |
38475445 |
cctgaacttaataaaattacacatatacccccatattatttgtactttgaaccc---gaattaaatttttgcaccttgacccaagacagtctaacactca |
38475541 |
T |
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| Q |
511 |
cctcagacccatt |
523 |
Q |
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|||||||| |||| |
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| T |
38475542 |
cctcagactcatt |
38475554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 216 - 299
Target Start/End: Original strand, 34577024 - 34577107
Alignment:
| Q |
216 |
atattgtttattgggttatgactaatctcaatgatcgttaaagtgtactcaacattcttgatgatagagttgcatcatcaaagt |
299 |
Q |
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|||||||||||||||||||| | ||| || |||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34577024 |
atattgtttattgggttatggcgaatttctgtgatcgcgaaagtgtactaaacattcttgatgatagagttgcatcatcaaagt |
34577107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 12061987 - 12061902
Alignment:
| Q |
207 |
aagcaaaatatattgtttattgggttatgactaatctcaatgatcgttaaagtgtactcaacattcttgatgatagagttgcatca |
292 |
Q |
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|||||||| | |||||| |||||||||||| ||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||| |
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| T |
12061987 |
aagcaaaagacattgttcattgggttatgagtaatctcaacgatcgcgaaagtgtactcagcattcttgatggtagagttgcatca |
12061902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 10707380 - 10707285
Alignment:
| Q |
23 |
tcattaatacaacaattttgcattagcagttctacttttg-cttctttatttttcaattattttttcgcccaacctcttcatatagttgttttccc |
117 |
Q |
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||||| ||||||||||||| |||||| ||||| |||||| |||| |||| ||||||||||||| | | |||||||| ||||| ||||||||||| |
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| T |
10707380 |
tcattgatacaacaattttccattagaagttccacttttaacttccttatctttcaattattttctttctcaacctctacatattgttgttttccc |
10707285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 47036922 - 47037022
Alignment:
| Q |
23 |
tcattaatacaacaattttgcattagcagttctactttt-gcttctttatttttcaattattttttcgcccaacctcttcatatagttgttttcccgtaa |
121 |
Q |
| |
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||||| ||||||||||||| |||||| ||||| |||||| |||| |||| |||||||||||| | | |||||||| ||||| | ||||||||| ||| |
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| T |
47036922 |
tcattgatacaacaattttccattagaagttccacttttaacttccttatcattcaattattttctttctcaacctctacatattgctgttttcccataa |
47037021 |
T |
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| Q |
122 |
t |
122 |
Q |
| |
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| |
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|
| T |
47037022 |
t |
47037022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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