View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_25 (Length: 519)
Name: NF11538_high_25
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 519
Target Start/End: Original strand, 33531071 - 33531582
Alignment:
| Q |
8 |
aagcacagacctggtagacataaccannnnnnnaatcagcataagagggttattggccaatgagttgagtaacatatgattnnnnnnnntgtaggagtgc |
107 |
Q |
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| T |
33531071 |
aagcatagacctggtagacataaccatttttttaatcagcataagagggttattggccaatgagttgagtaacatatgattaaaaaaaatgtaggagtgc |
33531170 |
T |
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| Q |
108 |
ctaaaataaaacatttaaccaaagaaactaacctttggagctgaatccacacctaaggatattgcagactgtgtttccttcaatataactttccaatcct |
207 |
Q |
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| T |
33531171 |
ctaaaataaaacatttaaccaaagaaactaacctttggagctgaatccacacctaaggatattgcagactgtgtttccttcaatataactttccaatcct |
33531270 |
T |
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| Q |
208 |
tgactttcctggcctcactgcatttgttaaagtgaacttgaagagcctgagcttggaaatcaagttccgaatcaaagtacggagtttctttattgcagtt |
307 |
Q |
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| T |
33531271 |
tgactttcctggcctcactgcatttgttaaagtgaacttgaagagcctgagcttggaaatcaagttccgaatcaaagtacggagtttctttattgcagtt |
33531370 |
T |
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| Q |
308 |
caatgccttttctgcttctcccaacctgcattaaaattttcaattctatnnnnnnncaataacacaaaaagaaacacaaccattaatataactaagtgat |
407 |
Q |
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| T |
33531371 |
caatgccttttctgcttctcccaacctgcattaaaattttcaattctataaaaaaacaataacacaaaaacaaacacaaccattaatataactaagtgat |
33531470 |
T |
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| Q |
408 |
tgagctcaagtaatagtgggttttatttaattacaaattgattgggagttcccgagtttgaaccccgattgaaacaacttttggtccaacttaacttatc |
507 |
Q |
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| T |
33531471 |
tgagcccaagtaatagtgggttttatttaattacaaattgattgggagttcccgagtttgaaccccgattgaaataacttttggtccgacttaacttatc |
33531570 |
T |
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| Q |
508 |
tcccatctgaac |
519 |
Q |
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| T |
33531571 |
tcccatccgaac |
33531582 |
T |
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Back To:
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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 271
Target Start/End: Original strand, 26209083 - 26209227
Alignment:
| Q |
127 |
caaagaaactaacctttggagctgaatccacacctaaggatattgcagactgtgtttccttcaatataactttccaatccttgactttcctggcctcact |
226 |
Q |
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||||| ||||||||| |||||||||||| |||||||||||| |||||||||||||||||| | || ||| |||| || |||| |||||| || || | |
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| T |
26209083 |
caaaggaactaacctgtggagctgaatcggcacctaaggataatgcagactgtgtttcctttagtacaacactccattcattgaatttcctagcttctat |
26209182 |
T |
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| Q |
227 |
gcatttgttaaagtgaacttgaagagcctgagcttggaaatcaag |
271 |
Q |
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| T |
26209183 |
gcatttcttcaggtgattttgtagagcctgagcttgaaaagcaag |
26209227 |
T |
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