View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_33 (Length: 472)
Name: NF11538_high_33
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 7 - 456
Target Start/End: Original strand, 29199948 - 29200397
Alignment:
| Q |
7 |
gaagcagagagcctggggtttggtttccggaagaggtatattagcatctaagtttcaatctttcttcttttggttacatttcaaagatgttatatcaaac |
106 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29199948 |
gaagcacacagcctggggtttggtttccggaagaggtatattagcatctaagtttcaatctttcttcttttggttacatttcaaagatgttatatcaaac |
29200047 |
T |
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| Q |
107 |
ataaataagtttcctttgtgctatgactattttgttgaactataaatgtagcctcaaggaattccaattgaagcaagagaagttcttctaaagcgtgcta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29200048 |
ataaataagtttcctttgtgctatgactattttgttgaactataaatgtagcctcaaggaattccaattgaagcaagagaagttcttctaaagcgtgcta |
29200147 |
T |
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| Q |
207 |
gccaaggaacgattaactttgcactgaacaagttagctttcttatctttgagcttttgttatatgtttcatgggacttggtggaaaattttattctgttt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29200148 |
gccaaggaacgattaactttgcactgaacaagttagctttcttatctttaagcttttgttatatgtttcatgggacttggtggaaaattttattctgttt |
29200247 |
T |
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| Q |
307 |
tcttttgaaaataaacaggtcaccatggatgattgaaacaaatccaaaggaagttggattaggaatatatgtatgagtttttcatacttaagtaaaaagt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29200248 |
tcttttgaaaataaacaggtcaccatggatgattgaaacaaatccaaaggaagttggattaggaatatatgtatgagtttttcatacttaagtaaaaagt |
29200347 |
T |
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| Q |
407 |
atacttcagcaaaattcttcctattgtagtgcaaggccgtaggtgtatat |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29200348 |
atacttcagcaaaattcttcctattgtagtgcaaggccgtaggtgtatat |
29200397 |
T |
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