View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_high_35 (Length: 465)
Name: NF11538_high_35
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_35 |
 | |
|
| [»] scaffold0098 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
| [»] scaffold0498 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Complemental strand, 10584051 - 10583619
Alignment:
| Q |
20 |
aacgatgcgagatctatcgaaccaactgacttctgatgaggtggtggcaaaacaactaattgtttcaatggcataagtgcaaatagttatacatgaatat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| |
|
|
| T |
10584051 |
aacgatgcgagatctatcgaaccaactgacttctgatgaggtggtggcaaaacaactaattgttttaatgacataagtgcaaatagttatatatgaatat |
10583952 |
T |
|
| Q |
120 |
agacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgactaggctcaaactaaatcaaaagac |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10583951 |
agacctacccgttatctct-atgcgataacacctatacataatttaaaccatgtcctttagatagtca-ggctgactaggctcaaactaaatcaaaagac |
10583854 |
T |
|
| Q |
220 |
caattgcagaacagtaca--------tcatcgacgaaacattaagaacg-atttaaactaaagattacattgaatgcaaaaatcatatacaaccagccag |
310 |
Q |
| |
|
|||||||| || |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583853 |
caattgcaaaatagtacatcatcgattcatcgacaaaacattaagaacgaatttaaactaaagattacattgaatgcaaaaatcatatacaaccagccag |
10583754 |
T |
|
| Q |
311 |
attaagagtactacatggattcctagatatttaaatcagacaccaacacacaagagagtttagatacccatgatatgcataactaacataagatagttga |
410 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583753 |
attaagagtactacatgg-ttcctggatatttaaatcagacaccaacacacaagatagtttagatacccatgatatgcataactaacataagatagttga |
10583655 |
T |
|
| Q |
411 |
tagatattggagaggcgtcaccaagcttgattccaa |
446 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| |
|
|
| T |
10583654 |
tagatattggagaagcatcaccaagcttgattccaa |
10583619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 25642087 - 25641956
Alignment:
| Q |
147 |
aacacctatacataatttaaaccatgtcctttagatagtcagggctgacta-ggctcaaactaaatcaaaagaccaattgcagaacagtacatcatcgac |
245 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
25642087 |
aacacctatgcataatttaaaccatgtcccttagatagtaaggga-gactaaggctcaaactaaatcaaaagattaattgcagaacactacatcatcgac |
25641989 |
T |
|
| Q |
246 |
gaaacattaagaa-cgatttaaactaaagatta |
277 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
25641988 |
aaaacattaagaataaatttaaactaaagatta |
25641956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 102 - 423
Target Start/End: Original strand, 8717867 - 8718188
Alignment:
| Q |
102 |
atagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgactag-gc |
200 |
Q |
| |
|
||||||||||||||| | ||| ||||| ||||| ||| |||||||||||| ||||||||||||||||||||| |||||| || | | | ||||| || |
|
|
| T |
8717867 |
atagttatacatgaactt-gacatacccactatctataaagcgataacacctttacataatttaaaccatgtcccttagatggtaatgcc-gactaaagc |
8717964 |
T |
|
| Q |
201 |
tcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaacg-atttaaactaaagattacattgaatgcaaaaatcatata |
299 |
Q |
| |
|
||||||||||| |||||| |||| |||| |||||| ||| | || ||||||||| ||||||||||||||||| ||| |||||| ||||| ||| |
|
|
| T |
8717965 |
tcaaactaaattaaaagataaattatgtaacactacatcgtcgtcaaagaattaagaacatatttaaactaaagattatattaaatgcataaatcgaata |
8718064 |
T |
|
| Q |
300 |
caaccagccagattaagagtactacatggattcctagatatttaaatcagacaccaacacacaagagagtttagatacccatgatatgcataactaacat |
399 |
Q |
| |
|
|||||||||| |||||||||||| ||| | ||||| |||||| ||| | |||||||| |||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
8718065 |
caaccagccatattaagagtactgcataaaatcctaactatttacatccaatcccaacacaaaagagagtttagttacccatgaaaaacataactaacaa |
8718164 |
T |
|
| Q |
400 |
aagatagttgatagatattggaga |
423 |
Q |
| |
|
| | ||||||| |||||||||| |
|
|
| T |
8718165 |
acaaaggttgataaatattggaga |
8718188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 78 - 274
Target Start/End: Complemental strand, 18997566 - 18997370
Alignment:
| Q |
78 |
attgtttcaatggcataagtgcaaatagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctt |
177 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||||||| |||| ||||| ||| | ||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
18997566 |
attgtttcaatggcatacacgcagatagttgtacatga-tatatacctatccgctttctctaacgcgataacacctatacataatttaaaccatgtcgct |
18997468 |
T |
|
| Q |
178 |
tagatagtcagggctgact-aggctcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaac-gatttaaactaaaga |
274 |
Q |
| |
|
||||||||| | | ||| || || ||||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
18997467 |
cagatagtcaagac-aactaagacttaaactaaattaaaagatcaattgtagaacttcacatcatcgacaaaacattaagaacatatttaaactaaaga |
18997370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 17433465 - 17433545
Alignment:
| Q |
261 |
atttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacatggattcctagatatt |
341 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||||||| |||||||| ||||||| |||||| || |||||| |||| |
|
|
| T |
17433465 |
atttaaaccaaagattatattgaatgcataaatcatatacaatcagccagactaagagtgctacatagaatcctagctatt |
17433545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 25642245 - 25642101
Alignment:
| Q |
20 |
aacgatgcgagatctatcgaaccaactgacttctgatgaggtggtggcaaaacaactaattgtttcaatggcataagtgcaaatagttatacatgaatat |
119 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||| ||||||||| | | ||||||||| ||||||| | || |||||||||||||||||| |
|
|
| T |
25642245 |
aacgatgcgagatccattgaaccaactgactttccatgcatcggtggcaaactagccgattgtttcagtggcatacgcgcggatagttatacatgaatat |
25642146 |
T |
|
| Q |
120 |
agacctacccgttatctctaatgcgataacacctatacataattt |
164 |
Q |
| |
|
|||| ||| || ||||||||| | |||||||||||| |||||||| |
|
|
| T |
25642145 |
agacttactcgctatctctaacgtgataacacctatgcataattt |
25642101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 323
Target Start/End: Original strand, 25373088 - 25373385
Alignment:
| Q |
27 |
cgagatctatcgaaccaactgacttctgatgaggtggtggcaaaacaactaattgtttcaatggcataagtgcaaatagttatacatgaatatagaccta |
126 |
Q |
| |
|
||||||| || ||||||||||||||||||| | ||||||||| | || ||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25373088 |
cgagatcaattgaaccaactgacttctgatacgtcagtggcaaaatatctgattgtttaaatggcataagtgcggatagttatacatgaatatagaccta |
25373187 |
T |
|
| Q |
127 |
cccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgacta-ggctcaaactaaatcaaaagaccaattg |
225 |
Q |
| |
|
||||||| | |||| ||||| |||||||| ||||||||||||||||| ||||||||| ||| | ||||| ||||||||||||||||||||| |||||| |
|
|
| T |
25373188 |
cccgttaacactaacacgatagcacctataattaatttaaaccatgtcccttagatagtaaggtc-gactatggctcaaactaaatcaaaagatcaattg |
25373286 |
T |
|
| Q |
226 |
cagaacagtacatcatcgacgaaacattaagaac-gatttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtacta |
323 |
Q |
| |
|
| ||||| |||||| ||||| ||||||||||| | |||||||||| ||||||| ||| |||||| ||||| |||||||| | ||||||||||| ||||| |
|
|
| T |
25373287 |
cggaacactacatcgtcgacaaaacattaagagcggatttaaactgaagattaaatttaatgcataaatcgtatacaacaaaccagattaagaatacta |
25373385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 20617819 - 20618134
Alignment:
| Q |
20 |
aacgatgcgagatctatcgaaccaactgacttctgatgaggtggtggcaaaacaactaattgtttcaatggcataagtgcaaatagttatacatgaatat |
119 |
Q |
| |
|
||||||| ||||| || |||||||| ||||||||||| | ||||||||| | ||| ||| ||||| |||| |||| ||||||||||||||||| |
|
|
| T |
20617819 |
aacgatgtgagataaattgaaccaaccgacttctgatgcgccagtggcaaaatagacgattattttaatggaataaacgcaagtagttatacatgaatat |
20617918 |
T |
|
| Q |
120 |
agacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgactaggctcaaactaaatcaaaagac |
219 |
Q |
| |
|
|||| ||| |||||||||||| || ||||||| |||||||||||||||| ||||||||||||| |||| ||| ||| ||||||| ||||||||||| |
|
|
| T |
20617919 |
agacatacacgttatctctaacgctataacacatatacataatttaaactatgtcctttagattgtcaaa-ctggctaacctcaaacaaaatcaaaagat |
20618017 |
T |
|
| Q |
220 |
caattgcagaacagtacatcatcgacgaaacattaagaacga-tttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagag |
318 |
Q |
| |
|
|||||| ||||| |||||| |||| || |||||| || || |||||| ||||||||| ||||||| || |||||||||||||||| |||||||||||| |
|
|
| T |
20618018 |
caattgtggaacactacatcgccgacaaagcattaaaaatgaatttaaattaaagattatattgaatccataaatcatatacaaccaaccagattaagag |
20618117 |
T |
|
| Q |
319 |
tactacatggattccta |
335 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
20618118 |
tactacatagattccta |
20618134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 78 - 398
Target Start/End: Original strand, 15308296 - 15308615
Alignment:
| Q |
78 |
attgtttcaatggcataagtgcaaatagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctt |
177 |
Q |
| |
|
|||||||| ||||||||| |||| |||||||||||||| ||||| ||| || |||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15308296 |
attgtttctatggcataatctcaaaaagttatacatgaatttagacttactcgcgatctctcgtgcgataacacctatacataatttaaaccatgtccct |
15308395 |
T |
|
| Q |
178 |
tagatagtcagggctgactaggctcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaacg-atttaaactaaagatt |
276 |
Q |
| |
|
||||||| ||| || |||| | |||||||||||||| |||||| ||||| || ||| || | |||||||||||||| |||| ||||||| ||| |
|
|
| T |
15308396 |
tagatagccagtcttg--tagggcctgactaaatcaaaagatcaattgtggaacactatatcgtcttcaaaacattaagaacgaattttaactaaa-att |
15308492 |
T |
|
| Q |
277 |
acattg-aatgcaaaaatcatatacaaccagccagattaagagtactacatggattcctagatatttaaatcagacaccaacacacaagagagtttagat |
375 |
Q |
| |
|
| |||| || | |||||||||||||| | |||||||||||||||||||| |||| ||| ||| || ||| | |||||| | |||||||||||| | |
|
|
| T |
15308493 |
atattgaaaaagataaatcatatacaacaaaccagattaagagtactacataaattcatagctatatacatctaattccaacataaaagagagtttagtt |
15308592 |
T |
|
| Q |
376 |
acccatgatatgcataactaaca |
398 |
Q |
| |
|
|||||||| |||||| ||||||| |
|
|
| T |
15308593 |
acccatgagatgcatgactaaca |
15308615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 103 - 381
Target Start/End: Complemental strand, 14526866 - 14526591
Alignment:
| Q |
103 |
tagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgact-aggct |
201 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||| || |||||| | ||| |||| ||||| |
|
|
| T |
14526866 |
tagttatacatgaatatagacctacctattatctctaacgcgataacaccaatacataatataaaccatgtcccttggatagt-aaggccgactaaggct |
14526768 |
T |
|
| Q |
202 |
caaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaa-cgatttaaactaaagattacattgaatgcaaaaatcatatac |
300 |
Q |
| |
|
|||||||||| |||| | |||||| |||||| ||||| | | | || ||||||||| |||||||||||| | || |||||||| | ||||||||| | |
|
|
| T |
14526767 |
caaactaaataaaaatatcaattgtagaacactacatagtaggcaaagcattaagaagaaatttaaactaaaaagtatattgaatgtataaatcatattc |
14526668 |
T |
|
| Q |
301 |
aaccagccagattaagagtactacatggattcctagatatttaaatcagacaccaacacacaagagagtttagatacccat |
381 |
Q |
| |
|
|| ||| ||||||| |||||||| || ||||| |||||| ||| | |||||||| ||||| |||||| ||||||| |
|
|
| T |
14526667 |
aa----ccatattaagaatactacatagaatcctatctatttacatccaatcccaacacaaaagagggtttagttacccat |
14526591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 144 - 383
Target Start/End: Original strand, 12830511 - 12830747
Alignment:
| Q |
144 |
gataacacctatacataatttaaaccatgtcctttagatagtcagggctgactaggctcaaactaaatcaaaagaccaattgcagaacagtacatcatcg |
243 |
Q |
| |
|
|||| ||| |||| |||||||||||||| ||||||||||||||| |||| ||||||||| ||| ||| |||||| ||||||| ||||| |||||| ||| |
|
|
| T |
12830511 |
gatagcacttatatataatttaaaccatatcctttagatagtca-ggcttactaggctctgactgaattaaaagatcaattgcggaacactacatcgtcg |
12830609 |
T |
|
| Q |
244 |
acgaaacattaagaa-cgatttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacatggattcctagatattt |
342 |
Q |
| |
|
|| || ||||||||| ||||||||||||| || | ||||||||| |||||||| ||||||| || |||||||| | || || ||||||||| ||||| |
|
|
| T |
12830610 |
acaaagcattaagaatggatttaaactaaa-atcatattgaatgcgtaaatcatacacaaccaatcaaattaagagaagtatatagattcctagttattt |
12830708 |
T |
|
| Q |
343 |
aaatcagacaccaacacacaagagagtttagatacccatga |
383 |
Q |
| |
|
| |||| | ||| ||||||||||||||| ||||||||| |
|
|
| T |
12830709 |
acatcaaattcca--acacaagagagtttaattacccatga |
12830747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 153 - 318
Target Start/End: Complemental strand, 19623818 - 19623652
Alignment:
| Q |
153 |
tatacataatttaaaccatgtcctttagatagtcagggctgactagg-ctcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaaca |
251 |
Q |
| |
|
||||||||||||||| |||||| |||||| || ||| | ||||| | ||||||||||||||||||| ||||||||||||| |||||| | | || || |
|
|
| T |
19623818 |
tatacataatttaaaacatgtctcttagattgtaaggtc-gactaagactcaaactaaatcaaaagatcaattgcagaacactacatcgcgggcaaatca |
19623720 |
T |
|
| Q |
252 |
ttaagaacg-atttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagag |
318 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| | |||||||||||||||| ||| |||||||| |
|
|
| T |
19623719 |
ttaaaaacatatttaaactaaagattacattgaatggataaatcatatacaaccaaccatattaagag |
19623652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 99 - 383
Target Start/End: Original strand, 15304535 - 15304813
Alignment:
| Q |
99 |
caaatagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgactag |
198 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||| |||||||| || || ||||| |
|
|
| T |
15304535 |
caaaaagttatacatgaatatagacctactcacgatctcatgagtgataacacctatacataatttaaaccaa-----ttagatagccata-cttactag |
15304628 |
T |
|
| Q |
199 |
gctcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaacg-atttaaactaaagattacattgaatgcaaaaatcata |
297 |
Q |
| |
|
| || | ||||||||||||| ||||||| ||||| ||||| ||||| ||||||||| || | |||| ||||||| |||| |||||| || ||||| || |
|
|
| T |
15304629 |
ggtctagctaaatcaaaagatcaattgcggaacactacattgtcgacaaaacattaaaaatgaattttaactaaa-attatattgaaaacataaatcgta |
15304727 |
T |
|
| Q |
298 |
tacaaccagccagattaagagtactacatggattcctagatatttaaatcagacaccaacacacaagagagtttagatacccatga |
383 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||| ||| | |||| |||| | | |||||| |||||||||||| ||||||||| |
|
|
| T |
15304728 |
tacaaccaatcagattaatagtactacatagatttgtagctttttacatcaaatcctaacacaaaagagagtttagttacccatga |
15304813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 32044669 - 32044607
Alignment:
| Q |
264 |
taaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacat |
326 |
Q |
| |
|
||||| |||| ||| |||||||||| ||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
32044669 |
taaaccaaaggttatattgaatgcataaatcatatacaatcagctagattaagagtaatacat |
32044607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 20618149 - 20618195
Alignment:
| Q |
376 |
acccatgatatgcataactaacataagatagttgatagatattggaga |
423 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
20618149 |
acccatgatatgcataactaacat-agagagttgatagatgttggaga |
20618195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 24465902 - 24465824
Alignment:
| Q |
105 |
gttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatag |
184 |
Q |
| |
|
||||||||||||||||||| | | | |||||| ||| |||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
24465902 |
gttatacatgaatatagacttgcatgcgatctctcatg-gataacacctatacataatttaaatcatttcccttagatag |
24465824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 13306790 - 13306734
Alignment:
| Q |
106 |
ttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataat |
162 |
Q |
| |
|
||||||||||||||||||||||| || |||| | ||| | |||||||||||||||| |
|
|
| T |
13306790 |
ttatacatgaatatagacctacctgtaatcttttgtgcaaaaacacctatacataat |
13306734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 27 - 442
Target Start/End: Complemental strand, 44119541 - 44119124
Alignment:
| Q |
27 |
cgagatctatcgaaccaactgacttctgatgaggtggtggcaaaacaactaattgtttcaatggcataagtgcaaatagttatacatgaatatagaccta |
126 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| ||| ||||| |||| |||||| |||| |||||| |||||||||||||||||||||| || || |
|
|
| T |
44119541 |
cgagatccatcaaaccaactgacttctgatgcatatgtgacaaaataactgattgttcaaatgacataagctcaaatagttatacatgaatataaacata |
44119442 |
T |
|
| Q |
127 |
cccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgactaggctcaaactaaatcaaaagaccaattgc |
226 |
Q |
| |
|
||| ||||||||| ||| ||||| |||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44119441 |
cccattatctctatcatgatgacaccaatacataacttaaaccacattctttagatagtcaga-ctgactaggctcaaactaaatcaaaagaccaattgt |
44119343 |
T |
|
| Q |
227 |
agaacagtacatcatcgacgaaacattaagaacga-tttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactaca |
325 |
Q |
| |
|
||| | ||||||||||| || |||||| ||| | ||||||||||| |||| |||||||| | |||||||||||||||| |||| ||| |||||| || |
|
|
| T |
44119342 |
ggaataccacatcatcgacaaagcattaaaaacaagtttaaactaaatattatattgaatgtataaatcatatacaaccaaccag-ttagtagtactgca |
44119244 |
T |
|
| Q |
326 |
tggattcctagatatttaaatcagaca---ccaacacacaagagagtttagatacccatgatatgcataactaacataagatagttgatagatattggag |
422 |
Q |
| |
|
| |||||||| |||||| || | | |||||||| |||||||||||| ||| |||| |||| ||||||||||||||| ||||||||||| || | | |
|
|
| T |
44119243 |
tagattcctaactatttacttccaataatcccaacacaaaagagagtttagttactcatgctatgaataactaacataagagagttgatagatgtttgtg |
44119144 |
T |
|
| Q |
423 |
aggcgtcaccaagcttgatt |
442 |
Q |
| |
|
| |||||| ||||||||||| |
|
|
| T |
44119143 |
aagcgtcaacaagcttgatt |
44119124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 258
Target Start/End: Original strand, 27173539 - 27173688
Alignment:
| Q |
110 |
acatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcc--tttagatagtcagggctgactaggctcaaact |
207 |
Q |
| |
|
||||||||||||||||| | ||||||||||| || ||| ||||||| ||||||||||| ||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
27173539 |
acatgaatatagacctatctgttatctctaacgctatatcacctatgcataatttaaatcatgtcccttttagatagtca-agttgactaggctcaaact |
27173637 |
T |
|
| Q |
208 |
aaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaa |
258 |
Q |
| |
|
|| ||||||| ||||| | ||||| |||||| ||| | |||||||||||| |
|
|
| T |
27173638 |
aactcaaaaggacaattacggaacattacatcgtcggcaaaacattaagaa |
27173688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 25384217 - 25384127
Alignment:
| Q |
78 |
attgtttcaatggcataagtgcaaatagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaac |
168 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
25384217 |
attgtttcaataacatatttgcagatagttatacatgaatatagacctaccctatatctctaatgtgataacacctatagataatttaaac |
25384127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 107 - 378
Target Start/End: Original strand, 7566314 - 7566584
Alignment:
| Q |
107 |
tatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgactaggctcaaac |
206 |
Q |
| |
|
||||||||||| ||||||||||||| || ||| | |||||| | | |||||||||| ||||||||||| ||||||||||| | | |||||| || || |
|
|
| T |
7566314 |
tatacatgaatgtagacctacccgtgatttcttaggcgatatcgcatatacataatataaaccatgtctcttagatagtca-gccatactagggtctgac |
7566412 |
T |
|
| Q |
207 |
taaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaac-gatttaaactaaagattacattgaatgcaaaaatcatatacaacca |
305 |
Q |
| |
|
||||| ||||| ||| ||| ||||| |||||| |||| || |||||||||| |||| |||||| || | ||||| || |||||||||||||||| |
|
|
| T |
7566413 |
taaattaaaaggtcaactgcggaacactacatcgacgacaaagcattaagaacaaattttgactaaa-atcatgttgaaaacataaatcatatacaacca |
7566511 |
T |
|
| Q |
306 |
gccagattaagagtactacatggattcctagatatttaaatcagacaccaacacacaagagagtttagatacc |
378 |
Q |
| |
|
| |||||| ||| |||||||| | ||||||| |||||| ||| | |||||||| ||||||||||| |||| |
|
|
| T |
7566512 |
gtcagatttagactactacataggttcctagctatttacatccaatcccaacacaggagagagtttagttacc |
7566584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 447
Target Start/End: Complemental strand, 25035063 - 25034981
Alignment:
| Q |
365 |
agagtttagatacccatgatatgcataactaacataagatagttgatagatattggagaggcgtcaccaagcttgattccaat |
447 |
Q |
| |
|
||||||||| || |||| | |||||||||||||||| || ||||||||||| ||||||| || ||| |||||||||||||||| |
|
|
| T |
25035063 |
agagtttagttatccataaaatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttgattccaat |
25034981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 12832884 - 12832984
Alignment:
| Q |
78 |
attgtttcaatggcataagtgcaaatagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctt |
177 |
Q |
| |
|
|||||||| || ||||||| |||| ||||||||||||||||||||||||| |||||| |||||| || || ||||||||||||||||||||||| |
|
|
| T |
12832884 |
attgtttctatagcataagcccaaaaagttatacatgaatatagacctaccttaaatctctcgggcgatagcagctgtacataatttaaaccatgtcctt |
12832983 |
T |
|
| Q |
178 |
t |
178 |
Q |
| |
|
| |
|
|
| T |
12832984 |
t |
12832984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 82 - 446
Target Start/End: Original strand, 7395008 - 7395372
Alignment:
| Q |
82 |
tttcaatggcataagtgcaaatagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttaga |
181 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||| |||||||| ||||||||||| |||| || ||| |||| |||||||||| | ||| || |
|
|
| T |
7395008 |
tttcaatggcataaactcatataggtatacatgaatataaacctacccaatatctctaatgtgatagcatctaatcatagtttaaaccatataattttga |
7395107 |
T |
|
| Q |
182 |
tagtcagggctgactaggctcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaacg-atttaaactaaagattacat |
280 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||| || || || |||||||||| ||||||||||||| ||| || |
|
|
| T |
7395108 |
tagtcagg-ctgactaggctcaaactaaatcaaaagatcaattatggaacactacattgtcaacaaagcattaagaacacatttaaactaaaggttatat |
7395206 |
T |
|
| Q |
281 |
tgaatgcaaaaatcatatacaaccagccagattaagagtactacatggattcctagatatttaaatcagacaccaacacacaagagagtttagataccca |
380 |
Q |
| |
|
|||||||| ||||| |||| ||| ||| ||||||| | |||||||| |||||||| |||||| ||| || | ||||| |||||||||||| |||||| |
|
|
| T |
7395207 |
tgaatgcataaatcttatataacaagcaagattaatattactacatagattcctaactatttatatccaaccctaacaccgaagagagtttagttaccca |
7395306 |
T |
|
| Q |
381 |
tgatatgcataactaacataagatagttgatagatattggagaggcgtcaccaagcttgattccaa |
446 |
Q |
| |
|
|||||| | ||| ||||||||| ||||||||| | ||||||| || ||| ||||||||||||||| |
|
|
| T |
7395307 |
tgatatatagaacgaacataagagagttgatagctgttggagaagcatcaacaagcttgattccaa |
7395372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 315
Target Start/End: Original strand, 19416189 - 19416429
Alignment:
| Q |
76 |
taattgtttcaatggcataagtgcaaatagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcc |
175 |
Q |
| |
|
|||| |||| ||||||||| |||| ||| ||||||||||||||| ||||| || ||||| ||| | |||| |||| | ||||| ||||||||| ||| |
|
|
| T |
19416189 |
taatagtttaaatggcatacatgcagataattatacatgaatatatacctatcctctatctataacgtgatagcaccaaaacatagattaaaccatatcc |
19416288 |
T |
|
| Q |
176 |
tttagatagtcagggctgactaggc-tcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaacga-tttaaactaaag |
273 |
Q |
| |
|
|||| || | | | ||||| || |||||||||||||||||| |||||||| |||| |||||| ||||| || || ||||||||| |||||||||||| |
|
|
| T |
19416289 |
attaggtaataaagaa-gactaagcctcaaactaaatcaaaagatcaattgcataacactacatcctcgacaaagcaataagaacgaatttaaactaaag |
19416387 |
T |
|
| Q |
274 |
attacattgaatgcaaaaatcatatacaaccagccagattaa |
315 |
Q |
| |
|
|||| ||||||| || |||||||||||||||| |||||||| |
|
|
| T |
19416388 |
attatattgaatacataaatcatatacaaccattcagattaa |
19416429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 331
Target Start/End: Original strand, 27128605 - 27128833
Alignment:
| Q |
104 |
agttatacatgaatatagacctacccgttatctctaatgcgata--acacctatacataatttaaaccatgtcctttagatagtcagggctgactaggct |
201 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| |||||| | || ||||||||||||||||||| ||||||||||| ||| | || |||||||| |
|
|
| T |
27128605 |
agttatacatgaatatagacctacccgcgatatcttgggcgatataatacatatacataatttaaaccatatcctttagata-tcaagacttactaggct |
27128703 |
T |
|
| Q |
202 |
caaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaacg-atttaaactaaagattacattgaatgcaaaaatcatatac |
300 |
Q |
| |
|
|||||||||||||| ||||||| ||| | ||||| | || || ||||||||| |||||||||||| |||| |||||||| | ||||||||||| |
|
|
| T |
27128704 |
ttgactaaatcaaaagatcaattgcggaagactacattgttgataaagtattaagaacatatttaaactaaa-attatattgaatgtataaatcatatac |
27128802 |
T |
|
| Q |
301 |
aaccagccagattaagagtactacatggatt |
331 |
Q |
| |
|
||||| | ||||||| |||||||||| |||| |
|
|
| T |
27128803 |
aaccaacaagattaatagtactacatagatt |
27128833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 1467707 - 1467627
Alignment:
| Q |
104 |
agttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatag |
184 |
Q |
| |
|
|||||||||||||||||| | ||||| | |||||| | ||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
1467707 |
agttatacatgaatataggcatacccctaatctctcaggcgataacacctatacataatctaaaccatgtccattagatag |
1467627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 343
Target Start/End: Original strand, 318593 - 318832
Alignment:
| Q |
104 |
agttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgactaggc-tc |
202 |
Q |
| |
|
|||||| ||| |||||||| |||| || |||||| |||||| |||||||||||||| ||||||| |||| |||| | | ||| || ||||| || |
|
|
| T |
318593 |
agttatgcataaatatagatctactcgcgatctctcgggcgatagcacctatacataatctaaaccacgtcccttaggttgccagccttg-ctaggaatc |
318691 |
T |
|
| Q |
203 |
aaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaag-aacgatttaaactaaagattacattgaatgcaaaaatcatataca |
301 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||||| |||| || ||||||| || | |||| |||||| | || ||||| || |||||||||||| |
|
|
| T |
318692 |
taactaaatcaaaagatcaattgcagcacactacatcaccgacaaatcattaagaaaaggtttagactaaa-aatatattgagaacataaatcatataca |
318790 |
T |
|
| Q |
302 |
accagccagattaagagtactacatggattcctagatattta |
343 |
Q |
| |
|
|||||||| | |||||||| |||| ||||| ||||||||| |
|
|
| T |
318791 |
accagccaaactaagagtatcacatcaattccaagatattta |
318832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 4810579 - 4810457
Alignment:
| Q |
204 |
aactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaacga-tttaaactaaagattacattgaatgcaaaaatcatatacaa |
302 |
Q |
| |
|
||||||||||| ||| |||||| ||||| |||||||||| | || |||||||||| | ||||||||||| || | ||||| || ||||||||||||| |
|
|
| T |
4810579 |
aactaaatcaatagatcaattgttgaacactacatcatcggcaaagcattaagaacaaatttaaactaaa-ataatcttgaaaacataaatcatatacaa |
4810481 |
T |
|
| Q |
303 |
ccagccagattaagagtactacat |
326 |
Q |
| |
|
||| ||| | |||||||||||||| |
|
|
| T |
4810480 |
ccacccaaactaagagtactacat |
4810457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 446
Target Start/End: Original strand, 19417725 - 19417815
Alignment:
| Q |
356 |
acacacaagagagtttagatacccatgatatgcataactaacataagatagttgatagatattggagaggcgtcaccaagcttgattccaa |
446 |
Q |
| |
|
||||| || ||| ||||| ||||||| | ||| |||||||| |||||| ||||||||||| ||||||| || ||| ||||||||| ||||| |
|
|
| T |
19417725 |
acacaaaaaagaatttagttacccataagatgtataactaatataagagagttgatagatgttggagatgcatcaacaagcttgaatccaa |
19417815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 106 - 421
Target Start/End: Original strand, 15582861 - 15583177
Alignment:
| Q |
106 |
ttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgact-aggctcaa |
204 |
Q |
| |
|
|||||||||| |||||| || || |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| | ||| |||| |||||||| |
|
|
| T |
15582861 |
ttatacatgagcatagacatatcctctatctctaatacgatagcacctatacataatttaaaccatgtcccttagatagt-aaggccgactaaggctcaa |
15582959 |
T |
|
| Q |
205 |
actaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaac-gatttaaactaaagattacattgaatgcaaaaatcatatacaac |
303 |
Q |
| |
|
|||||||||||||| | |||| ||||| ||||||||||| || |||||||||| || ||||||||||||||| ||| ||| || |||||||||||||| |
|
|
| T |
15582960 |
actaaatcaaaagatc-attgtggaacatcacatcatcgacaaagcattaagaacagaattaaactaaagattatatttaatacataaatcatatacaac |
15583058 |
T |
|
| Q |
304 |
cagccagattaagagtactacatggattcctagatat-ttaaatcagacaccaacacacaagagagtttagatacccatgatatgcataactaacataag |
402 |
Q |
| |
|
|| ||| |||||||| |||||| || | |||| ||| ||| ||| | ||||||| |||||||||||| |||| |||| ||| |||||||||| ||| |
|
|
| T |
15583059 |
cacccatattaagagcactacaaagaattctagctatcttacatctaatctcaacacaaaagagagtttagttaccaatgaaatgtataactaacaaaag |
15583158 |
T |
|
| Q |
403 |
atagttgatagatattgga |
421 |
Q |
| |
|
| |||||||||| ||||| |
|
|
| T |
15583159 |
aaggttgatagatgttgga |
15583177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 14292253 - 14292337
Alignment:
| Q |
104 |
agttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcag |
188 |
Q |
| |
|
||||||||| ||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14292253 |
agttatacacgaatataaaactacccgcgatctctcgggcgataacacctatacataatttaaaccatgtcctttagatagtcag |
14292337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 284
Target Start/End: Original strand, 15077298 - 15077440
Alignment:
| Q |
143 |
cgataacacctatacataatttaaaccatgtcctttagatagtcagggctgactaggc-tcaaactaaatcaaaagaccaattgcagaacagtacatcat |
241 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||||||| ||| | || || || |||||||||||||||||| |||||| |||| ||||| || |
|
|
| T |
15077298 |
cgatatcacctatacataatttaaatcatgtcccttagatagtaaggcc-gattaagcctcaaactaaatcaaaagatcaattgtgaaacaatacattat |
15077396 |
T |
|
| Q |
242 |
cgacgaaacattaagaac-gatttaaactaaagattacattgaa |
284 |
Q |
| |
|
| || ||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
15077397 |
ctacaaaacattaataacatatttaaactaaagattacattgaa |
15077440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 409
Target Start/End: Original strand, 32067277 - 32067577
Alignment:
| Q |
107 |
tatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgactaggctcaaac |
206 |
Q |
| |
|
|||| |||||||||||||| |||| |||||| | |||||| ||||| | |||||| |||||||||||| |||||||| || || ||||||| | || |
|
|
| T |
32067277 |
tatatatgaatatagaccttcccgcgatctcttaagcgatagcacctgttcataatctaaaccatgtcccttagatagcca-accttactaggc-ctgac |
32067374 |
T |
|
| Q |
207 |
taaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaag-aacgatttaaactaaagattacattgaatgcaaaaatcatatacaacca |
305 |
Q |
| |
|
|||||||||||| |||||| | ||| ||||| |||| |||||||||| || |||||| |||||| |||| ||||| | |||||||||||||||| |
|
|
| T |
32067375 |
taaatcaaaagatcaattgtggcacactacattggcgacaaaacattaagaaaagatttagactaaa-attatgttgaaaatataaatcatatacaacca |
32067473 |
T |
|
| Q |
306 |
gccagattaagagtactacatggattcctagatatttaaatcagacaccaacacacaagagagtttagatacccatgatatgcataactaacataagata |
405 |
Q |
| |
|
||| |||||| ||| ||||| |||||||| |||||| |||| | ||||||| ||||||||||| ||| |||| ||||| ||||||| |||| | |
|
|
| T |
32067474 |
tccaaattaagcgtattacatatattcctagttatttatatcaaatcacaacacaagagagagtttagttactcatgggttgcatgactaacaaaagaga |
32067573 |
T |
|
| Q |
406 |
gttg |
409 |
Q |
| |
|
|||| |
|
|
| T |
32067574 |
gttg |
32067577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 335
Target Start/End: Complemental strand, 22569742 - 22569609
Alignment:
| Q |
203 |
aaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaac-gatttaaactaaagattacattgaatgcaaaaatcatataca |
301 |
Q |
| |
|
||||| |||| ||||| |||||| |||| |||||||||||| | || ||||||||| ||||||||||||| | |||||||||| | |||||||||||| |
|
|
| T |
22569742 |
aaactcaatccaaagatcaattgtagaaaagtacatcatcggcaaacaattaagaacagatttaaactaaatactacattgaatagataaatcatataca |
22569643 |
T |
|
| Q |
302 |
accagccagattaagagtactacatggattccta |
335 |
Q |
| |
|
|| | | |||| |||| |||||||| || ||||| |
|
|
| T |
22569642 |
actaacaagatgaagaatactacatagaatccta |
22569609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 22116614 - 22116559
Alignment:
| Q |
260 |
gatttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaa |
315 |
Q |
| |
|
||||||||| || ||||| |||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
22116614 |
gatttaaaccaaggattatattgaatgcataaatcatatacaactagccagattaa |
22116559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 106 - 327
Target Start/End: Complemental strand, 28609402 - 28609181
Alignment:
| Q |
106 |
ttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgactaggctcaaa |
205 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| |||||||||| ||||||||||||||||||||||| |||| |||| || | | |||||| || |
|
|
| T |
28609402 |
ttatacatgaatatatacctacccaacatctctaacgcgataacacatatacataatttaaaccatgtcccttagttagtaagaccagttaaggctcgaa |
28609303 |
T |
|
| Q |
206 |
ctaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaacga-tttaaactaaagattacattgaatgcaaaaatcatatacaacc |
304 |
Q |
| |
|
|||| |||||| | ||||||||||||| |||||| | ||| |||||| |||||| | ||||||| |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
28609302 |
ctaa-tcaaaatatcaattgcagaacactacatcgttgacaaaacatcaagaacaaatttaaacaaaagattatattgaatgcataaatcatatacaacc |
28609204 |
T |
|
| Q |
305 |
agccagattaagagtactacatg |
327 |
Q |
| |
|
| |||||||| ||||||||||| |
|
|
| T |
28609203 |
aatcagattaatagtactacatg |
28609181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 150 - 341
Target Start/End: Original strand, 15549336 - 15549527
Alignment:
| Q |
150 |
acctatacataatttaaaccatgtcctttagatagtcagggctgactaggctcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaa |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||| ||||| | | || |
|
|
| T |
15549336 |
acctatacataatttaaaccatgtcctttagatagtca-agctgactaggctcagactaaatcaaaagattaattgcggaacactacattgccagcaaag |
15549434 |
T |
|
| Q |
250 |
cattaagaacg-atttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacatggattcctagatatt |
341 |
Q |
| |
|
|||| |||| | |||||||||||| |||| |||||||||| |||||||| |||| || |||||||| |||||||||| ||||||||| |||| |
|
|
| T |
15549435 |
cattgagaaggaatttaaactaaaaattatattgaatgcataaatcatacacaaaaagtcagattaaaagtactacatagattcctagctatt |
15549527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 24967733 - 24967855
Alignment:
| Q |
150 |
acctatacataatttaaaccatgtcctttagatagtcagggctgactaggctcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaa |
249 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| | |||| ||||| ||||| | ||| || |
|
|
| T |
24967733 |
acctatacatagtttaaaccatgtcctttagataatca-ggctgactaggcttaaactaaatcaaaagatcgattgtggaacactacataaatgacaaag |
24967831 |
T |
|
| Q |
250 |
cattaagaac-gatttaaactaaa |
272 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
24967832 |
cattaagaacaaatttaaactaaa |
24967855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 33661329 - 33661394
Alignment:
| Q |
122 |
acctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagg |
189 |
Q |
| |
|
||||||||| |||||||| | ||||||||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
33661329 |
acctacccgctatctctagggtgataacaccta--cataacttaaaccacgtcctttagatagtcagg |
33661394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 144 - 415
Target Start/End: Original strand, 18476160 - 18476431
Alignment:
| Q |
144 |
gataacacctatacataatttaaaccatgtcctttagatagtcagggctgactaggctcaaactaaatcaaaagaccaattgcagaacagtacatcatcg |
243 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||| || |||||||| ||||| ||||| ||| |
|
|
| T |
18476160 |
gataacacgtgtacataatttaaaccatgtcctttagatagccaggt-tgacaaggctcatactaaataaagtaaccaattgttgaacactacattgtcg |
18476258 |
T |
|
| Q |
244 |
acgaaacattaagaacg-atttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacatggattcctagatattt |
342 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| | | |||||||| | ||||| ||||||||| ||||| |
|
|
| T |
18476259 |
gaaaaacattaagaacatatttaaactaaagattatattgaatgcgtaaatcatatacaaccatcaatattaagagcaatacatagattcctagctattt |
18476358 |
T |
|
| Q |
343 |
aaatcagacaccaacacacaagagagtttagatacccatgatatgcataactaacataagatagttgatagat |
415 |
Q |
| |
|
| ||| | | || |||| ||||| |||||| ||||||| | |||||||| || || |||| ||||||||||| |
|
|
| T |
18476359 |
acatcgaataacagcacaaaagagtgtttagttacccataagatgcataaatatcacaagagagttgatagat |
18476431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 64 - 326
Target Start/End: Original strand, 18220684 - 18220947
Alignment:
| Q |
64 |
tggcaaaacaactaattgtttcaatggcataagtgcaaatagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatt |
163 |
Q |
| |
|
|||||||| | || ||| |||||| |||||| | || ||||||||||||||||||| |||||| || ||||||||| | |||| || ||||| |||| |
|
|
| T |
18220684 |
tggcaaaatacctgattatttcaaaggcatatgcgcggatagttatacatgaatatatacctactcgatatctctaacgtgatagcaactatatgtaatc |
18220783 |
T |
|
| Q |
164 |
taaaccatgtcctttagatagtcagggctgactaggctcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaacga-t |
262 |
Q |
| |
|
||||||||||| ||| ||||||| | | | |||||||| |||||||||||| || || | |||| | |||| ||||| || ||||||||| | | |
|
|
| T |
18220784 |
gaaaccatgtcccttatatagtcatgacggctaaggctcaatttaaatcaaaagatcagttttataacattgcatcgtcgacaaagcattaagaataaat |
18220883 |
T |
|
| Q |
263 |
ttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacat |
326 |
Q |
| |
|
|||||||||| |||| |||||||||| |||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
18220884 |
ttaaactaaaaattatattgaatgcataaatcatatacaaccaaccaaattaagagtaccacat |
18220947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 13002567 - 13002649
Alignment:
| Q |
261 |
atttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacatggattcctagatattta |
343 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| ||||| |||||||||| ||||| || || |||||||||| |
|
|
| T |
13002567 |
atttaaaccaaagattatattgaatgcataaatcatatacaactagccaaattaagagtaatacatagaatcttagatattta |
13002649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 13077225 - 13077307
Alignment:
| Q |
261 |
atttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacatggattcctagatattta |
343 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| ||||| |||||||||| ||||| || || |||||||||| |
|
|
| T |
13077225 |
atttaaaccaaagattatattgaatgcataaatcatatacaactagccaaattaagagtaatacatagaatcttagatattta |
13077307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 16551111 - 16551165
Alignment:
| Q |
260 |
gatttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagatta |
314 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16551111 |
gatttaaactaaatattatattgaatgcaaaaatcatatacaacaagccagatta |
16551165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 63 - 326
Target Start/End: Original strand, 11222736 - 11223000
Alignment:
| Q |
63 |
gtggcaaaacaactaattgtttcaatggcataagtgcaaatagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataat |
162 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| | ||| ||||||||||||||||||| ||||||| | | ||||||| |||||||| ||||||| || |
|
|
| T |
11222736 |
gtggcaaaataaccaattgtttcaatggcatacgcgcagatagttatacatgaatatatacctacctactttttctaatgtgataacacatatacattat |
11222835 |
T |
|
| Q |
163 |
ttaaaccatgtcctttagatagtcagggctgactaggctcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaac-ga |
261 |
Q |
| |
|
|||||||||| ||||||| || | | | |||||| |||||||||||||| |||||| ||||| ||||| || || || |||||||||| || |
|
|
| T |
11222836 |
ttaaaccatgcaatttagatggtaacaccggttaaggctctcactaaatcaaaagatcaattgtggaacactacattgtcaacaaagcattaagaacgga |
11222935 |
T |
|
| Q |
262 |
tttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacat |
326 |
Q |
| |
|
||||||| |||| ||| ||||||| || |||| |||||| |||| || ||||| |||||||||| |
|
|
| T |
11222936 |
tttaaacaaaagtttaaattgaattcataaataatatacgaccaaacaaattaaaagtactacat |
11223000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 26279945 - 26280146
Alignment:
| Q |
144 |
gataacacctatacataatttaaaccatgtcctttagatagtcagggctgactaggctcaaactaaatcaaaagaccaattgcagaacagtacatcatcg |
243 |
Q |
| |
|
|||| ||||||||||| |||||||||| |||| ||||||| | ||| || | |||||||||||| |||| | || || ||||| |||||||||| |
|
|
| T |
26279945 |
gatagcacctatacatgatttaaaccacgtcccttagataattaggcatgtcactactcaaactaaattaaaatatcatctgtggaacaatacatcatcg |
26280044 |
T |
|
| Q |
244 |
acgaaa-cattaagaac-gatttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacatggattcctagatatt |
341 |
Q |
| |
|
| ||| |||||||||| ||||||||| ||||||| |||||||||| ||||||||| ||| || ||||||||||||| ||||| || ||||||||||| |
|
|
| T |
26280045 |
gcaaaagcattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatt |
26280144 |
T |
|
| Q |
342 |
ta |
343 |
Q |
| |
|
|| |
|
|
| T |
26280145 |
ta |
26280146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 398
Target Start/End: Complemental strand, 3557 - 3262
Alignment:
| Q |
99 |
caaatagttatacatgaatatagacctacccgttatctctaatgcgataacacctatacataatttaaaccatgtcctttagatagtcagggctgactag |
198 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||| |||||| |||||| ||||||||||||| |||| ||||||||| ||||||| || || ||||| |
|
|
| T |
3557 |
caaaaagttatacatgaatataaaccaacccaacatctctcgagcgatagaacctatacataatctaaatcatgtcctt-agatagtaagc-cttactag |
3460 |
T |
|
| Q |
199 |
gctcaaactaaatcaaaagaccaattgcagaacagtacatcatcgacgaaacattaagaacga-tttaaactaaagattacattgaatgcaaaaatcata |
297 |
Q |
| |
|
| || ||||||| |||||| ||| ||||||| ||||| |||||| ||| || |||||| ||||||||||| ||||| ||| || |||||||| |
|
|
| T |
3459 |
ggtctgactaaatgaaaagatcaacaacagaacactacattatcgacaaaatatatcgaacgaatttaaactaaa-attactgagaa--cataaatcata |
3363 |
T |
|
| Q |
298 |
tacaaccagccagattaagagtactacatggattcctagatatttaaatcagacaccaacacacaagagagtttagatacccatgatatgcataactaac |
397 |
Q |
| |
|
|| | |||||| |||||||||||||||| |||| ||| |||||| ||| | |||||| | |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
3362 |
tatatccagccgaattaagagtactacatagatttctacctatttacatccaatcccaacataaaagaaagtttagttacccatgatatgcataactaac |
3263 |
T |
|
Back To:
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Target: scaffold0078 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 18517 - 18584
Alignment:
| Q |
260 |
gatttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacatg |
327 |
Q |
| |
|
||||||||||||| |||| |||||||||| ||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
18517 |
gatttaaactaaatattaaattgaatgcataaatcatgtataaccagccagattaagagtactacatg |
18584 |
T |
|
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Target: scaffold0072 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 343
Target Start/End: Complemental strand, 36246 - 36166
Alignment:
| Q |
262 |
tttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacatggattcctagatattta |
343 |
Q |
| |
|
||||||||||| |||| |||| ||||| || ||||||||||| |||||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
36246 |
tttaaactaaa-attatattggatgcataagtcatatacaactggccagattaaaagtactacatagatttctagatattta |
36166 |
T |
|
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Target: scaffold0498 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0498
Description:
Target: scaffold0498; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 2925 - 2843
Alignment:
| Q |
261 |
atttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacatggattcctagatattta |
343 |
Q |
| |
|
||||||| |||||||| ||| | |||| |||||||||||||| | |||||||||| ||||||||| | || |||||||||| |
|
|
| T |
2925 |
atttaaataaaagattatattaattgcataaatcatatacaacaatccagattaagcgtactacatataatcatagatattta |
2843 |
T |
|
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