View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_4 (Length: 806)
Name: NF11538_high_4
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 262 - 795
Target Start/End: Complemental strand, 38052670 - 38052139
Alignment:
| Q |
262 |
ttggctttcaacttctgaagcgtggtgaacttatatattcgtttagtggtnnnnnnnnttgaggtaccggattgaagagattgaatgctttttgtatata |
361 |
Q |
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| T |
38052670 |
ttggctttcaacttctcaagcgtggtgaacttatatattcgtttagtggtaaaaaaaattgaggtaccggattgaagagattgaatattttttgtatata |
38052571 |
T |
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| Q |
362 |
cttgtgtcatgtccaaataagttatctagatgtctcttaacgattcttaatgtccaaataagctctctagataactcttaatgacatgtttgatccatga |
461 |
Q |
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| T |
38052570 |
cttgtgtcatgtccaaataagttctctagatgtctcttaacgactcttaatgtccaaatacgctctctagataactcttaatgacatgtttgatcaatga |
38052471 |
T |
|
| Q |
462 |
tgaaagctcaagagccatcttttgctcacaagtagcaattgaagcaatatgtcatttataagtttctaacaaaacataaaatcctacggagcccatcaaa |
561 |
Q |
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| T |
38052470 |
tgaaagctcaag--ccatcttttgctcacaagtagcaattgaagcaatatgtcatttataagtttctaacaaaacataaaatcctacggagcccatcaaa |
38052373 |
T |
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| Q |
562 |
caatatcataatcactaggttgtatgctttttaatataattaaatcccaatttaaagagcaccaaaacatcaacttacagagatttaaacaatttgttat |
661 |
Q |
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| T |
38052372 |
caatatcataatcactaggttgtatgctttttaatataattaaatcccaatttaaagagcaccaaaacatcaacttacagagatttaaacaatttgttat |
38052273 |
T |
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| Q |
662 |
ggtttgtattttagtttcagactctatcaaaaagtttgatggaactatgtttaaaatccggcggttttggagatactttttagagaaaggttttgttgaa |
761 |
Q |
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| T |
38052272 |
ggtttgtattttagtttcagactctatcaaaaagtttgatggaactatgtttaaaatccggcagttttggagatactttttagagaaagattttgttgaa |
38052173 |
T |
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| Q |
762 |
ccnnnnnnngaagaaaatttcaagagtttgaagt |
795 |
Q |
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| T |
38052172 |
ccaaaaaaagaagaaaatttcaagagtttgaagt |
38052139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 38053189 - 38053046
Alignment:
| Q |
18 |
cacagagtggacggaaatataattcaacaaaccaaattaattcgttaggtcgtttgattagtattcgtaatatcaatcattttccatattataaataaca |
117 |
Q |
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|||||||||| ||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38053189 |
cacagagtggtcggaaatataattcaacgaatcaaattaatttgttagatcgtttgattagtattcgtaatatcaatcattttccatattataagtaaca |
38053090 |
T |
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| Q |
118 |
ttcctaacatgtctaattaatgcaaagtttaacatagaataaag |
161 |
Q |
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| T |
38053089 |
ttcctaacatgtctaattaatgcaaagtttaacatagaataaag |
38053046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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