View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_41 (Length: 430)
Name: NF11538_high_41
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 4 - 426
Target Start/End: Complemental strand, 44954378 - 44953956
Alignment:
| Q |
4 |
tcaccttcaaagtaattaatttgttacggacagaataatattattcttttagacttaattaaaacagaacaatatttttataagagaaagtgggagaaag |
103 |
Q |
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| T |
44954378 |
tcaccttcaaagtaattaatttgttacggacagaataatattattcttttagacttaattaaaacagaacaatatttttataagagaaagtgggagaaag |
44954279 |
T |
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| Q |
104 |
taagaagtagggagtttcggtccatgtgaaaatggataaaggaataagagagggaaagtgtagatgaatttttatagattnnnnnnnngtcaataaatga |
203 |
Q |
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| T |
44954278 |
taagaagtagggagtttcggtccatgtgaaaatggataaaggaataagagagggaaagtgtagatgaatttttatagattaaaaaaaagtcaataaatga |
44954179 |
T |
|
| Q |
204 |
tataataatgtaatggatgtcagttaattaggttataagcaaccaagaacgacaagtgtaaagacagaacaaggaggtagataagcacttgcatgttttg |
303 |
Q |
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| T |
44954178 |
tataataatgtaatggatgtcagttaattaggttataagcaaccaagaacgacaagtgtaaagatagaacaaggaggtagataagcacttgcatgttttg |
44954079 |
T |
|
| Q |
304 |
tataattctttcgtgattagtggcattgttgaaagggatctttaaactggtccatattccttgcagtgttgtagcttcacataatttcatacgacaattg |
403 |
Q |
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| T |
44954078 |
tataattctttcgtgattagtggcattgttggaagggatctttaaactggtccatattccatgcagtgttgtagcttcacataatttcatacgacaattg |
44953979 |
T |
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| Q |
404 |
atctcagccgttgatctgtgctc |
426 |
Q |
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| T |
44953978 |
atctcagccgttgatttgtgctc |
44953956 |
T |
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