View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_high_44 (Length: 422)

Name: NF11538_high_44
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_high_44
NF11538_high_44
[»] chr3 (4 HSPs)
chr3 (1-394)||(20400609-20401004)
chr3 (120-196)||(8536490-8536566)
chr3 (120-196)||(1320166-1320242)
chr3 (126-195)||(365716-365784)
[»] chr7 (18 HSPs)
chr7 (120-204)||(1786571-1786655)
chr7 (120-204)||(11000943-11001027)
chr7 (120-204)||(11228869-11228953)
chr7 (120-204)||(4133406-4133490)
chr7 (120-204)||(6451867-6451951)
chr7 (124-210)||(1369687-1369773)
chr7 (120-210)||(8063913-8064003)
chr7 (120-210)||(27142548-27142638)
chr7 (120-204)||(1690248-1690332)
chr7 (120-203)||(8916494-8916580)
chr7 (120-204)||(24840031-24840115)
chr7 (120-195)||(3778831-3778908)
chr7 (123-195)||(4955984-4956056)
chr7 (120-204)||(11228608-11228692)
chr7 (120-203)||(5934493-5934576)
chr7 (131-194)||(19404238-19404301)
chr7 (120-204)||(1365558-1365643)
chr7 (120-173)||(35814790-35814843)
[»] chr8 (10 HSPs)
chr8 (120-204)||(14130053-14130137)
chr8 (120-198)||(24578894-24578972)
chr8 (120-204)||(26377918-26378003)
chr8 (122-204)||(10629237-10629319)
chr8 (120-204)||(26374786-26374872)
chr8 (120-176)||(16598082-16598138)
chr8 (120-176)||(30440653-30440709)
chr8 (120-191)||(24577645-24577716)
chr8 (120-156)||(16598184-16598220)
chr8 (120-203)||(31072244-31072327)
[»] chr6 (11 HSPs)
chr6 (120-204)||(32361256-32361340)
chr6 (120-210)||(1127136-1127226)
chr6 (120-204)||(14216783-14216867)
chr6 (124-196)||(3814500-3814572)
chr6 (131-198)||(12778528-12778595)
chr6 (120-203)||(34373903-34373986)
chr6 (131-204)||(8047493-8047566)
chr6 (131-195)||(8049996-8050061)
chr6 (144-204)||(12881910-12881970)
chr6 (120-203)||(11658820-11658903)
chr6 (143-195)||(33615648-33615700)
[»] chr2 (9 HSPs)
chr2 (120-204)||(1218404-1218488)
chr2 (120-204)||(32163889-32163972)
chr2 (121-204)||(33053304-33053388)
chr2 (120-204)||(5171702-5171786)
chr2 (120-194)||(33051516-33051590)
chr2 (120-204)||(32162087-32162171)
chr2 (120-204)||(23457533-23457618)
chr2 (126-195)||(21772271-21772340)
chr2 (160-204)||(280159-280203)
[»] chr1 (16 HSPs)
chr1 (120-200)||(10925632-10925712)
chr1 (121-204)||(239575-239658)
chr1 (120-204)||(10927082-10927166)
chr1 (120-197)||(9030912-9030988)
chr1 (120-204)||(12944004-12944088)
chr1 (124-204)||(36694679-36694759)
chr1 (124-204)||(36710780-36710860)
chr1 (124-210)||(33152842-33152929)
chr1 (131-204)||(40804518-40804589)
chr1 (144-197)||(12033722-12033775)
chr1 (120-196)||(28660864-28660938)
chr1 (134-197)||(10928002-10928065)
chr1 (120-195)||(31915446-31915521)
chr1 (120-176)||(9199332-9199389)
chr1 (120-176)||(9195059-9195115)
chr1 (120-204)||(23987457-23987544)
[»] chr4 (9 HSPs)
chr4 (120-204)||(17255015-17255099)
chr4 (120-204)||(7633965-7634052)
chr4 (120-203)||(21433680-21433762)
chr4 (120-203)||(3765324-3765407)
chr4 (120-206)||(13991496-13991582)
chr4 (120-204)||(38888107-38888189)
chr4 (120-197)||(40206043-40206120)
chr4 (141-204)||(52743770-52743833)
chr4 (124-173)||(18689672-18689721)
[»] scaffold0251 (1 HSPs)
scaffold0251 (120-204)||(9591-9674)
[»] scaffold0240 (2 HSPs)
scaffold0240 (124-210)||(15868-15954)
scaffold0240 (122-199)||(1550-1627)
[»] scaffold0024 (2 HSPs)
scaffold0024 (122-204)||(145621-145703)
scaffold0024 (120-204)||(144034-144118)
[»] scaffold0054 (2 HSPs)
scaffold0054 (120-204)||(37599-37684)
scaffold0054 (120-204)||(49209-49294)
[»] scaffold0330 (1 HSPs)
scaffold0330 (122-199)||(17532-17609)
[»] scaffold0090 (1 HSPs)
scaffold0090 (121-195)||(15182-15255)
[»] chr5 (1 HSPs)
chr5 (122-195)||(22440753-22440827)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 20400609 - 20401004
Alignment:
Q  1 ataactagggaaattttaagatctctagatttttctaggcctgtaaactagaatttcatcaccttatctctagatttttcttatgat----ccattgcta 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  20400609 ataactagggaaattttaagatctctagatttttctaggcctgtaaactagaatttcatcaccttatctctagatttttcttatgatatatccattgcta 20400708  T
Q  97 gcaacaaattcctcaagaccttatctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaa 196  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||||||||    
T  20400709 gcaacaaattcctcaggaccttatctctaaaatattattgaatgaataaaagttgtctcttaaactacaaccgttaagcttatatagcgaaataacaaaa 20400808  T
Q  197 ccctaatgcgccaagattttttcatgcatgtttgcaggttaggaaaaggaaaaatcaaataataactctnnnnnnncgtgattcttggatagaaggagtt 296  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||    
T  20400809 ccctaatgcgccaagattttttcatgcatgtttgcaagttaggaaaaggaaaaatcaaataatagctct--aaaaacgtgattcttggatagaaggagtt 20400906  T
Q  297 gcggaaatcaagaggcatttcaaaagcatattcacagatacagatgaatctaggccaagattggagggagttacatttcaacaactatgcttgtcaga 394  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20400907 gctgaaatcaagaggcatttcaaaagcatattcacagatacagatgaatctaggccaagattggagggacttacatttcaacaactatgcttgtcaga 20401004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 8536490 - 8536566
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaa 196  Q
    |||||||||| ||||  ||||||||||||||||||||||  |||||||||| ||||| | |||||||||||||||||    
T  8536490 tctctaaaatattatctaatgaataaaagttgcctcttaggctacaactgtcaagcttaaatagggaaataacaaaa 8536566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 1320166 - 1320242
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaa 196  Q
    |||||||||| ||||||||||||||||||||  ||||||  ||||||||| ||| || |  ||||||||||||||||    
T  1320166 tctctaaaatattattgaatgaataaaagttatctcttagcctacaactggtaaacttaagtagggaaataacaaaa 1320242  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 365716 - 365784
Alignment:
Q  126 aaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaa 195  Q
    |||| ||||||| ||||||||||||  ||||||  |||||||||||||||| | ||| ||||||||||||    
T  365716 aaatattattgattgaataaaagttatctcttaggctacaactgttaagctta-atatggaaataacaaa 365784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 1786655 - 1786571
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||| |||||||||||||| |||||||  |||||||||||||||| | |||||||||||||||||||||||||    
T  1786655 tctctaaaatattatttaatgaataaaagtttcctcttaggctacaactgttaagcttaaatagggaaataacaaaaccctaatg 1786571  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 11000943 - 11001027
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||| | ||| | |||||||||||||||||||    
T  11000943 tctctaaaatattattgaatgaataataattgcctcttaagctacaactgttaagcttaaataagaaaataacaaaaccctaatg 11001027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 11228953 - 11228869
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||||| ||||||||||||||||||||  |||||| ||||||||| | ||||||||||||||||||| |||||    
T  11228953 tctctaaaatattattgagtgaataaaagttgcctcttatgctacaaatgttaagcttaaatagggaaataacaaaaccgtaatg 11228869  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 4133406 - 4133490
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| |||||||||||||| |||||||||||||  |||||||| |||||||   |||| ||||||||||||||||||||    
T  4133406 tctctaaaatattattgaatgaatataagttgcctcttaggctacaacttttaagcttgaatagagaaataacaaaaccctaatg 4133490  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 6451867 - 6451951
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||||||||||| ||||||| ||||||  |||||||||||||| | | |||||||||||||||| ||||||||    
T  6451867 tctctaaaatattattgaatgaattaaagttgtctcttaggctacaactgttaagtttaaatagggaaataacaaacccctaatg 6451951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 1369773 - 1369687
Alignment:
Q  124 taaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatgcgccaa 210  Q
    |||||| ||||||||| ||||||||||| ||||||  |||||||| ||||||| | ||||| ||||||||||||||||||| |||||    
T  1369773 taaaatattattgaattaataaaagttgtctcttaggctacaactattaagcttaaataggaaaataacaaaaccctaatgggccaa 1369687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 8063913 - 8064003
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatgcgccaa 210  Q
    |||||||||| ||||||||| |||||||| |||||||||| ||||||||||||| || | ||||| |||||| |||||| ||||| |||||    
T  8063913 tctctaaaatattattgaattaataaaagatgcctcttaagctacaactgttaaacttaaataggaaaataaaaaaaccttaatgggccaa 8064003  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 27142638 - 27142548
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatgcgccaa 210  Q
    ||||| |||| ||||| ||| |||||||||| |||||||| |||||| ||||||||| | |||||||||||||||||||| |||| |||||    
T  27142638 tctctgaaatattattcaattaataaaagttccctcttaacctacaattgttaagcttaaatagggaaataacaaaacccaaatgggccaa 27142548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 1690248 - 1690332
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    ||||||||||  |||| ||||||||||||||| ||||||  |||||||||||||  | | |||| ||||||||||||||||||||    
T  1690248 tctctaaaatagtatttaatgaataaaagttgtctcttaggctacaactgttaaaattaaatagcgaaataacaaaaccctaatg 1690332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 8916494 - 8916580
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcata---tagggaaataacaaaaccctaat 203  Q
    |||||||||| |||||||||||||||||||| |||||||   ||||||||||||||| | |   |||||||| ||||||||||||||    
T  8916494 tctctaaaatattattgaatgaataaaagtttcctcttatgttacaactgttaagcttaaatactagggaaacaacaaaaccctaat 8916580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 24840115 - 24840031
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||| ||| ||||||||||||||||||  ||||||  |||||||| |  ||||||||||||||||| ||||||    
T  24840115 tctctaaaatattattcaataaataaaagttgcctcttaggctacaatggttaagcttaattagggaaataacaaaactctaatg 24840031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 3778831 - 3778908
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttg--cctcttaaactacaactgttaagctcatatagggaaataacaaa 195  Q
    |||||||||| ||||||| ||||||||||||   ||||||| |||||||| |||||||| | ||||||||||||||||    
T  3778831 tctctaaaatattattgattgaataaaagttattcctcttagactacaaccgttaagcttaaatagggaaataacaaa 3778908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 4955984 - 4956056
Alignment:
Q  123 ctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaa 195  Q
    ||||||| |||||||||||||||||| || ||||||  ||||||| | |||||| | ||||||||||||||||    
T  4955984 ctaaaatattattgaatgaataaaagatgactcttaggctacaacgggtaagcttaaatagggaaataacaaa 4956056  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 11228692 - 11228608
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||| ||| ||| |||||||| ||| |||  ||||| ||||||||||   |||||||||||||||||||||||||    
T  11228692 tctctaaaatattagtgattgattaaaagttaccttttaggctacacctgttaagctttaatagggaaataacaaaaccctaatg 11228608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 5934576 - 5934493
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaat 203  Q
    |||||||||| ||||||||||||||||| |||| |||||  ||||||| ||||||||   ||| ||||||| |||||| |||||    
T  5934576 tctctaaaatattattgaatgaataaaaattgcttcttaggctacaaccgttaagcttgaatatggaaatagcaaaactctaat 5934493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 19404238 - 19404301
Alignment:
Q  131 ttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaa 194  Q
    |||||||||||||||||||||||||||| |||| |||| |||| || | ||||| |||||||||    
T  19404238 ttattgaatgaataaaagttgcctcttagactataactcttaaacttaaataggaaaataacaa 19404301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 1365643 - 1365558
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctc-ttaaactacaactgtt-aagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||||||||||||||||||||||| ||   |||||| |||| ||||| |  ||||||||||||||||||||||||    
T  1365643 tctctaaaatattattgaatgaataaaagttgcctctttggcctacaa-tgttaaagcttaactagggaaataacaaaaccctaatg 1365558  T

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Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 35814843 - 35814790
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaa 173  Q
    |||||||||| ||||||||||||||||||| | ||||||| ||||||| |||||    
T  35814843 tctctaaaatattattgaatgaataaaagtcgtctcttaagctacaaccgttaa 35814790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 14130137 - 14130053
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||||| | ||| |||||||||||||| ||||||    
T  14130137 tctccaaaatattattgaatgaataaaagttgcctcttagactacaattgttaagcttaaataaggaaataacaaaactctaatg 14130053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 24578894 - 24578972
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaacc 198  Q
    |||||||||| ||||| ||| ||||||||||||| ||||| |||||| ||||||||| | |||||||||||||||||||    
T  24578894 tctctaaaatattatttaataaataaaagttgccccttaagctacaaatgttaagcttaaatagggaaataacaaaacc 24578972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 26378003 - 26377918
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagtt--gcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||||||||||||||||||  |||| |||| |||||||| |||| || | |||||||||||||||||||||||||    
T  26378003 tctctaaaatattattgaatgaataaaagttatgcct-ttaagctacaactattaaacttaaatagggaaataacaaaaccctaatg 26377918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 10629237 - 10629319
Alignment:
Q  122 tctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||| ||||| || ||||||||||||| ||||| |||||||| |||||||| | ||||| |||||||||||| ||||||    
T  10629237 tctaaaatattatttaacgaataaaagttgcatcttagactacaacagttaagcttaaataggaaaataacaaaactctaatg 10629319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 26374872 - 26374786
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagtt--gcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||| | ||||||||||||||||||||  ||||||||  |||||| ||||||||| | |||| ||||| ||||||||||||||    
T  26374872 tctctaaattattattgaatgaataaaagttatgcctcttaggctacaattgttaagcttaaatagtgaaattacaaaaccctaatg 26374786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 16598138 - 16598082
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagct 176  Q
    |||||||||| ||||||||||||||||||||| ||||||  ||||||| ||||||||    
T  16598138 tctctaaaatattattgaatgaataaaagttgtctcttagtctacaaccgttaagct 16598082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 30440709 - 30440653
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagct 176  Q
    |||||||||| |||||||||||||||||||| | |||||  ||||||||||||||||    
T  30440709 tctctaaaatattattgaatgaataaaagtttcatcttatgctacaactgttaagct 30440653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 24577645 - 24577716
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataa 191  Q
    |||||||||| |||||||||||||||||| |||||||||  ||| |||||||||| | | |||| |||||||    
T  24577645 tctctaaaatattattgaatgaataaaagctgcctcttaggctataactgttaagtttaaatagagaaataa 24577716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 16598220 - 16598184
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctct 156  Q
    |||||||||| ||||||||||||||||||||||||||    
T  16598220 tctctaaaatattattgaatgaataaaagttgcctct 16598184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 31072244 - 31072327
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaat 203  Q
    |||||||||  |||||||| |||||||| || ||| ||| ||||||||||||||||| |  |||| |||||  |||||||||||    
T  31072244 tctctaaaacattattgaaggaataaaattttccttttagactacaactgttaagcttaactaggaaaatagaaaaaccctaat 31072327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 32361340 - 32361256
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||| | ||||||||| ||||||| |||||||    
T  32361340 tctctaaaatattattgaatgaataaaagttgtctcttaagctacaacttttaagcttaaatagggaaacaacaaaatcctaatg 32361256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 1127226 - 1127136
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatgcgccaa 210  Q
    ||||||||||  |||||||||||||||| |||  ||||| ||||||||| ||||||| | ||| ||||||||||||||||||||| |||||    
T  1127226 tctctaaaataatattgaatgaataaaaattgtatcttagactacaactattaagcttaaataaggaaataacaaaaccctaatgggccaa 1127136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 14216867 - 14216783
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttg-cctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    ||||| |||| ||||||||| ||||||||||  |||||||  |||||||||||||||| ||||||| |||||||||||||||||||    
T  14216867 tctctgaaatattattgaataaataaaagttatcctcttaggctacaactgttaagcttatatagg-aaataacaaaaccctaatg 14216783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 3814500 - 3814572
Alignment:
Q  124 taaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaa 196  Q
    |||||| |||||||||||||| || ||| |||||| ||||||| ||||||||| | |||||||||||||||||    
T  3814500 taaaatattattgaatgaatacaaattgtctcttagactacaattgttaagcttaaatagggaaataacaaaa 3814572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 12778528 - 12778595
Alignment:
Q  131 ttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaacc 198  Q
    ||||||||||||||||||||||||| ||  ||||||| |||||||| | ||| |||||||||||||||    
T  12778528 ttattgaatgaataaaagttgcctcgtaggctacaacggttaagcttaaatatggaaataacaaaacc 12778595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 34373903 - 34373986
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaat 203  Q
    |||||||||| |||||||||||  ||||| |||||||||  |||||||||||||||| |  | ||||||||||||||| |||||    
T  34373903 tctctaaaatattattgaatgatcaaaagctgcctcttaggctacaactgttaagcttaattggggaaataacaaaactctaat 34373986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 8047493 - 8047566
Alignment:
Q  131 ttattgaatgaataaaagttg-cctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    ||||||||||||||||||||  || ||||  |||||||||||||||| | ||||||||||||| |||||||||||    
T  8047493 ttattgaatgaataaaagttatccacttaggctacaactgttaagcttaaatagggaaataac-aaaccctaatg 8047566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 8049996 - 8050061
Alignment:
Q  131 ttattgaatgaataaaagttg-cctcttaaactacaactgttaagctcatatagggaaataacaaa 195  Q
    ||||||||||||||||||||  || ||||  |||||||||||||||| | ||||||||||||||||    
T  8049996 ttattgaatgaataaaagttatccacttaggctacaactgttaagcttaaatagggaaataacaaa 8050061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 12881970 - 12881910
Alignment:
Q  144 aaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||| | ||||||  |||||||||||||||| | |||||||||||||||| ||||||||    
T  12881970 aaaagtcgtctcttaggctacaactgttaagcttacatagggaaataacaaatccctaatg 12881910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 11658903 - 11658820
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaat 203  Q
    |||||||||| ||||||| ||||||||||||  ||||||   || ||||||||| || | |||||||||||| |||| ||||||    
T  11658903 tctctaaaatattattgattgaataaaagttttctcttaggttataactgttaaacttaaatagggaaataagaaaatcctaat 11658820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 33615648 - 33615700
Alignment:
Q  143 taaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaa 195  Q
    ||||||||  ||||||| ||||||||||||| || | ||||||||||||||||    
T  33615648 taaaagttatctcttaagctacaactgttaaacttaaatagggaaataacaaa 33615700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 1218404 - 1218488
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||||||| |||| || | ||||| |||||||||||||||||||    
T  1218404 tctctaaaatattattgaatgaataaaagttgtctcttatactacaacttttaaacttaaataggaaaataacaaaaccctaatg 1218488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 32163889 - 32163972
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| |||||||||||||||||||| |||||||  ||| |||||||||||| | |||||||||||||||||||||||||    
T  32163889 tctctaaaatattattgaatgaataaaagtttcctcttag-ctataactgttaagcttaaatagggaaataacaaaaccctaatg 32163972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 33053388 - 33053304
Alignment:
Q  121 ctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagc-tcatatagggaaataacaaaaccctaatg 204  Q
    ||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||| | | |||||||||||||||| ||||||||    
T  33053388 ctctaaaatattattgaatgaataaaagttgtctcttaaacaacaattgttaagcttaaaatagggaaataacaaacccctaatg 33053304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 5171702 - 5171786
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||| ||||||||||| ||| |||||| ||||||||||||||||| | ||||  |||||||||||| ||||||    
T  5171702 tctctaaaatattatttaatgaataaaaattgtctcttagactacaactgttaagcttaaatagcaaaataacaaaactctaatg 5171786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 33051590 - 33051516
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaa 194  Q
    |||||||||| |||||||||||||| |||||| |||||| ||||||| ||||||||| | ||||| |||||||||    
T  33051590 tctctaaaatattattgaatgaatataagttgtctcttagactacaattgttaagcttaaataggaaaataacaa 33051516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 32162087 - 32162171
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||||||| |||||||| |||||||||   ||||||| ||||| | | |||||||||||| |||| |||||||    
T  32162087 tctctaaaatattattgaataaataaaagctgcctcttacgttacaactattaagtttaaatagggaaataataaaatcctaatg 32162171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 23457618 - 23457533
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagtt--gcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||||||||||||||||||  | ||||||  |||||| |||||| || | ||||| ||||||| |||||||||||    
T  23457618 tctctaaaatattattgaatgaataaaagttaagtctcttaggctacaattgttaaacttaaataggaaaataac-aaaccctaatg 23457533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 21772340 - 21772271
Alignment:
Q  126 aaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaa 195  Q
    |||| |||||||| |||||||||||  ||||||| ||||||||||||| || | ||| | ||||||||||    
T  21772340 aaatattattgaacgaataaaagttatctcttaagctacaactgttaaacttaaatatgaaaataacaaa 21772271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 280159 - 280203
Alignment:
Q  160 actacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    ||||||| ||||||||| | |||||||||||||||||| ||||||    
T  280159 actacaattgttaagcttagatagggaaataacaaaactctaatg 280203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 10925712 - 10925632
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccct 200  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||||||||||  | | |||||||||||||||||||||    
T  10925712 tctctaaaatattattgaatgaataaaagtttcctcttaagctacaactgttaaatttaaatagggaaataacaaaaccct 10925632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 239658 - 239575
Alignment:
Q  121 ctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    ||||||||| ||||| |||||||||||||| ||| ||| ||||||||||||||||| | ||||||| |||||||||| ||||||    
T  239658 ctctaaaatattattaaatgaataaaagttaccttttagactacaactgttaagcttacatagggagataacaaaactctaatg 239575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 10927166 - 10927082
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||| ||||||||||||||| ||||||  |||||| ||||||| | | ||||||||||||||||||| |||||    
T  10927166 tctctaaaatattatttaatgaataaaagttgtctcttaggctacaattgttaagattaaatagggaaataacaaaaccataatg 10927082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 9030988 - 9030912
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaac 197  Q
    |||||||||| |||||||||||||||||||| || |||||  |||||||||||| || | ||||||||||||||||||    
T  9030988 tctctaaaatattattgaatgaataaaagtt-ccacttaagttacaactgttaaacttaaatagggaaataacaaaac 9030912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 12944088 - 12944004
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    ||||||||||  ||||||||||||||||||||| | |||  |||||| ||||||||| | ||||| ||||||||||||| |||||    
T  12944088 tctctaaaataatattgaatgaataaaagttgcattttatgctacaattgttaagcttaaataggaaaataacaaaaccataatg 12944004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 36694679 - 36694759
Alignment:
Q  124 taaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||| ||||||||| ||||||||||| ||||||  |||||||| |||| || | ||||||||||||||||||| |||||    
T  36694679 taaaatattattgaattaataaaagttgtctcttaggctacaactattaaacttaaatagggaaataacaaaaccttaatg 36694759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 36710780 - 36710860
Alignment:
Q  124 taaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||| ||||||||| ||||||||||| ||||||  |||||||| |||| || | ||||||||||||||||||| |||||    
T  36710780 taaaatattattgaattaataaaagttgtctcttaggctacaactattaaacttaaatagggaaataacaaaaccttaatg 36710860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 33152842 - 33152929
Alignment:
Q  124 taaaatgttattgaatgaataa-aagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatgcgccaa 210  Q
    |||||| ||||||| ||||||| |||||  |||||| |||||| |||||||||| | |||||||||||||||||| | |||| |||||    
T  33152842 taaaatattattgattgaataataagttatctcttagactacatctgttaagcttaaatagggaaataacaaaactcaaatgggccaa 33152929  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 40804589 - 40804518
Alignment:
Q  131 ttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    ||||||||||||  ||||||||||||||  ||||||||||||| || | ||| ||||||||||||| |||||||    
T  40804589 ttattgaatgaa--aaagttgcctcttaggctacaactgttaatcttaaataaggaaataacaaaatcctaatg 40804518  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 12033722 - 12033775
Alignment:
Q  144 aaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaac 197  Q
    |||||||| |||||| |||||||||||||| || | ||||||||||||||||||    
T  12033722 aaaagttgtctcttagactacaactgttaaacttaaatagggaaataacaaaac 12033775  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 28660864 - 28660938
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaa 196  Q
    |||||||||| ||||||||| ||||||||||  ||||||  |||||||||||||||| | ||| |||||||| ||||    
T  28660864 tctctaaaatattattgaattaataaaagtt--ctcttagtctacaactgttaagcttaaatatggaaataataaaa 28660938  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 10928065 - 10928002
Alignment:
Q  134 ttgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaac 197  Q
    ||||| |||||||||||| ||||||  |||||| ||||||||| | |||| |||||||||||||    
T  10928065 ttgaaggaataaaagttgtctcttaggctacaattgttaagcttaaatagagaaataacaaaac 10928002  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 31915521 - 31915446
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaa 195  Q
    ||||||||||  || ||| ||||||||||||  ||||||  ||||| |||||||||| | ||||||||||||||||    
T  31915521 tctctaaaatactactgattgaataaaagttatctcttaggctacatctgttaagcttaaatagggaaataacaaa 31915446  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 9199332 - 9199389
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaag-ttgcctcttaaactacaactgttaagct 176  Q
    |||||||||| |||||||| ||||||||| ||||||||||  |||||| |||||||||    
T  9199332 tctctaaaatattattgaaagaataaaagtttgcctcttaggctacaaatgttaagct 9199389  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 9195059 - 9195115
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagct 176  Q
    |||||||| | ||||||||||||||||||| | ||||||  |||||| |||||||||    
T  9195059 tctctaaagtattattgaatgaataaaagtcgtctcttaggctacaaatgttaagct 9195115  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 23987544 - 23987457
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagtt--gcctcttaaactacaactgttaagctcata-tagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||||| ||||||||| ||  | ||||||  |||||||||||||||| | | |||| ||||||||||| |||||||    
T  23987544 tctctaaaatattattgattgaataaaatttatgtctcttacgctacaactgttaagcttaaaataggaaaataacaaaatcctaatg 23987457  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 17255015 - 17255099
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| |||||||||||||| |||||||||||||  |||||||| |||||||   |||| ||||||||||||||||||||    
T  17255015 tctctaaaatattattgaatgaatataagttgcctcttaggctacaacttttaagcttgaatagagaaataacaaaaccctaatg 17255099  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 7634052 - 7633965
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcata---tagggaaataacaaaaccctaatg 204  Q
    |||||||||| |||||||||||||||||||| |||||||   ||||||||||||||| | |   ||||||||||||||||||||||||    
T  7634052 tctctaaaatattattgaatgaataaaagtttcctcttatgttacaactgttaagcttaaatactagggaaataacaaaaccctaatg 7633965  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 21433680 - 21433762
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaat 203  Q
    |||||||||| ||||||||||||||||| ||| ||||| | |||||||||||||||| | ||||| ||||||||||| ||||||    
T  21433680 tctctaaaatattattgaatgaataaaacttgtctctt-agctacaactgttaagcttaaataggaaaataacaaaatcctaat 21433762  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 3765324 - 3765407
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaat 203  Q
    |||| ||||| ||||||||| ||||||||||| || |||  |||||| ||||||||| | |||||||| |||||||||||||||    
T  3765324 tctcaaaaatattattgaataaataaaagttggcttttatgctacaattgttaagcttaaatagggaattaacaaaaccctaat 3765407  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 13991496 - 13991582
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatgcg 206  Q
    |||||||||| |||||||||||||||||||| |||||||  |||||||  ||||    | |||||||||||||||||| ||||||||    
T  13991496 tctctaaaatattattgaatgaataaaagttccctcttaggctacaaccattaaatataaatagggaaataacaaaactctaatgcg 13991582  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 38888107 - 38888189
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| |  |||||||||||||||||| |||||||| ||||||||||||| | | ||||| |||||  ||||||||||||    
T  38888107 tctctaaaatatggttgaatgaataaaagttgactcttaaagtacaactgttaagtttaaataggaaaata--aaaaccctaatg 38888189  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 40206120 - 40206043
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaac 197  Q
    |||||||||| ||||||||||||||||| ||  |||||| ||||||||| |||| || | ||||| ||||||||||||    
T  40206120 tctctaaaatattattgaatgaataaaaattatctcttagactacaactattaaacttaaataggaaaataacaaaac 40206043  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 52743770 - 52743833
Alignment:
Q  141 aataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    ||||||||||| |||||| |||| ||||||||| || | ||| |||||||| ||||||||||||    
T  52743770 aataaaagttgtctcttagactataactgttaaacttaaatatggaaataataaaaccctaatg 52743833  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 18689672 - 18689721
Alignment:
Q  124 taaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaa 173  Q
    |||||| |||||||||||||||||||| | ||||| |||| |||||||||    
T  18689672 taaaatattattgaatgaataaaagtttcttcttagactataactgttaa 18689721  T

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Target: scaffold0251 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 9674 - 9591
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    ||||| |||| |||||||||||||||||||| | || || |||| |||||||||||| | |||||||||||||||||||||||||    
T  9674 tctctgaaatattattgaatgaataaaagtttc-tcctagactataactgttaagcttaaatagggaaataacaaaaccctaatg 9591  T

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Target: scaffold0240 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 15954 - 15868
Alignment:
Q  124 taaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatgcgccaa 210  Q
    |||||| ||||||||| |||||||||| | || ||  |||||||||||||||| | ||||| ||||||||||||||||||| |||||    
T  15954 taaaatattattgaattaataaaagtttcttcctaggctacaactgttaagcttaaataggaaaataacaaaaccctaatgggccaa 15868  T

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Target: scaffold0240; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 1627 - 1550
Alignment:
Q  122 tctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccc 199  Q
    |||||||| ||||| |||||||||||||| |||||||   ||||||||||||||| | ||| ||||||||||||||||    
T  1627 tctaaaatattattcaatgaataaaagtttcctcttaggttacaactgttaagcttaaataaggaaataacaaaaccc 1550  T

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Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 145703 - 145621
Alignment:
Q  122 tctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||| |||||||||||||||||| | ||||||| ||||||||||||||||| | ||| ||| || ||||||| ||||||    
T  145703 tctaaaatattattgaatgaataaaagcttcctcttagactacaactgttaagcttaaataaggagattacaaaacgctaatg 145621  T

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Target: scaffold0024; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 144034 - 144118
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccctaatg 204  Q
    |||||||||| ||||||||| ||||||||||  ||| ||  ||||||||||| || | | ||||| |||||||||||||||||||    
T  144034 tctctaaaatattattgaataaataaaagttatctcatatgctacaactgttgagtttaaataggaaaataacaaaaccctaatg 144118  T

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Target: scaffold0054 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 37684 - 37599
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatat-agggaaataacaaaaccctaatg 204  Q
    |||||||||| | ||| ||||||||| |||||||||||| |||||||||| |||||| | || ||||||||||| |||||||||||    
T  37684 tctctaaaatataattaaatgaataacagttgcctcttagactacaactgctaagcttaaataagggaaataacgaaaccctaatg 37599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 49294 - 49209
Alignment:
Q  120 tctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatat-agggaaataacaaaaccctaatg 204  Q
    |||||||||| | ||| |||||||||||||| ||||||| ||||||||||||| ||| | || |||||||||||||||||| ||||    
T  49294 tctctaaaatataattaaatgaataaaagttacctcttagactacaactgttatgcttaaataagggaaataacaaaacccaaatg 49209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 17609 - 17532
Alignment:
Q  122 tctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaaaccc 199  Q
    |||||||| ||||| ||||||||||| || |||||||   ||||||||||||||| | ||| ||||||||||||||||    
T  17609 tctaaaatattattcaatgaataaaattttcctcttaggttacaactgttaagcttaaataaggaaataacaaaaccc 17532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 15182 - 15255
Alignment:
Q  121 ctctaaaatgttattgaatgaataaaagttgcctcttaaactacaactgttaagctcatatagggaaataacaaa 195  Q
    ||||||||| |||||||||||||||| |||  | ||||  |||||| ||||||||| | ||||||||||||||||    
T  15182 ctctaaaatattattgaatgaataaacgttctc-cttaggctacaattgttaagcttaaatagggaaataacaaa 15255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 22440827 - 22440753
Alignment:
Q  122 tctaaaatgttattgaatgaataaaagttgc-ctcttaaactacaactgttaagctcatatagggaaataacaaa 195  Q
    |||||||| ||||||||||||| |||||||  ||||||  ||  |||||||||||| | ||||||||||||||||    
T  22440827 tctaaaatattattgaatgaatcaaagttgttctcttagtctgaaactgttaagcttaaatagggaaataacaaa 22440753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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