View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_46 (Length: 421)
Name: NF11538_high_46
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 14596849 - 14597047
Alignment:
| Q |
1 |
gcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccac |
100 |
Q |
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| T |
14596849 |
gcccatcttagcacctggtgtagtcgatcagtaagattaattggtgcagatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccac |
14596948 |
T |
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| Q |
101 |
gattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
199 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596949 |
gattgtgcatgcggtaccctgtaaccacatcctctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
14597047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 250 - 405
Target Start/End: Original strand, 14597098 - 14597253
Alignment:
| Q |
250 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597098 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
14597197 |
T |
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| Q |
350 |
gacacagattctgctactgtaggagcatcgagtggttcacgaggtttcctaagaac |
405 |
Q |
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| T |
14597198 |
gacacagattctgctactgtaggagcatcgagtggttcacgaggtttcctaagaac |
14597253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 14611721 - 14611523
Alignment:
| Q |
1 |
gcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccac |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
14611721 |
gcccatcttagcacctggtgtagtcgatcagtaaggttaattggtgctgatccgcgaaatgcatctcgcttggtcacgcaatatacagaacgccatccac |
14611622 |
T |
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| Q |
101 |
gattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
199 |
Q |
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| T |
14611621 |
ggttgtgcatgcggtaacctgtaacgacgtcctctgtcactgatccataaatccatcccactctgtctccccattctgtcttctcttcgtacctacatg |
14611523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15417066 - 15417259
Alignment:
| Q |
1 |
gcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccac |
100 |
Q |
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||||||||||| || ||||||| ||||| || ||||| || ||||||| |||||| || || |||| || || | ||||||| || | |||||||| |
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| T |
15417066 |
gcccatcttagaacttggtgtaaacgatcggtgagatttataggtgctgttccacggaaagcgtctctttttgtgatgcaatatatcgatctccatccac |
15417165 |
T |
|
| Q |
101 |
gattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacct |
194 |
Q |
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| |||||||| | ||| || || || || |||||||||||||| ||||||||||| || | ||| |||||||||||||| || || |||||||| |
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| T |
15417166 |
ggttgtgcattctgtaaccagttacaacatcttctgtcactgatccataaatccaacctattctatctccccattctgttttatcctcatacct |
15417259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 12192718 - 12192859
Alignment:
| Q |
52 |
ccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaa |
151 |
Q |
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||||| || ||||| | |||||| |||||||| ||||| | |||||| | ||||||||| | || ||||| || || || || || || ||||| |||| |
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| T |
12192718 |
ccacggaaggcatccctcttggtcacacaatacacagacctccatcctctattgtgcattctataacctgtcacaacatcctcggttaccgacccgtaaa |
12192817 |
T |
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| Q |
152 |
tccatcccactctttctccccattctgtcttgtcttcatacc |
193 |
Q |
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||||||| ||||| ||||||||||| ||||| |||||||||| |
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| T |
12192818 |
tccatccaactctatctccccattcggtcttatcttcatacc |
12192859 |
T |
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