View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_high_48 (Length: 412)
Name: NF11538_high_48
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_48 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 23 - 410
Target Start/End: Complemental strand, 7739676 - 7739289
Alignment:
| Q |
23 |
cagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactggg |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7739676 |
cagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactggg |
7739577 |
T |
|
| Q |
123 |
cctattcctagctctttcagcaaactccaaagactacaaagactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttga |
222 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7739576 |
ccaattcctaactctttcagcaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttga |
7739477 |
T |
|
| Q |
223 |
agggcttacaggagtttgatttgtctaacaacaagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcgcagtttaatgtcagctt |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
7739476 |
agggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcccagtttaacgtcagctt |
7739377 |
T |
|
| Q |
323 |
taaccaactatgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
410 |
Q |
| |
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||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
7739376 |
taaccaactgtgtggtgctatccctactggattgagcaaatttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcct |
7739289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 23 - 410
Target Start/End: Complemental strand, 7727358 - 7726971
Alignment:
| Q |
23 |
cagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactggg |
122 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
7727358 |
cagccgtggctggggtctttctggtacgcttccagcagagtttggcgacctcccatatcttaacttcctctcattggctgaaatgcccaaagtaaccgga |
7727259 |
T |
|
| Q |
123 |
cctattcctagctctttcagcaaactccaaagactacaaagactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttga |
222 |
Q |
| |
|
|| || |||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
7727258 |
ccaatccctaactctttcagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttga |
7727159 |
T |
|
| Q |
223 |
agggcttacaggagtttgatttgtctaacaacaagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcgcagtttaatgtcagctt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7727158 |
agggcttacaggagtttgatttgtctaacaaccagttatccggtgttattcccgcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctt |
7727059 |
T |
|
| Q |
323 |
taaccaactatgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
410 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
7727058 |
taaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcct |
7726971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 23 - 410
Target Start/End: Complemental strand, 7731518 - 7731131
Alignment:
| Q |
23 |
cagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactggg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
7731518 |
cagccgtggctggggtctttccggtacgcttccagtagagtttggcgacctcccttatcttaacttcctctcattagccgaaatgccgaaagtaactggg |
7731419 |
T |
|
| Q |
123 |
cctattcctagctctttcagcaaactccaaagactacaaagactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttga |
222 |
Q |
| |
|
|| || |||| |||||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
7731418 |
ccaatccctaactcttttagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttga |
7731319 |
T |
|
| Q |
223 |
agggcttacaggagtttgatttgtctaacaacaagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcgcagtttaatgtcagctt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7731318 |
agggcttacaggagtttgatttgtctaacaaccagttatccggtgttattccggcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctt |
7731219 |
T |
|
| Q |
323 |
taaccaactatgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
410 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
7731218 |
taaccaactgtgtggtgctatccctactggattgagcaagtttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcct |
7731131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 25 - 410
Target Start/End: Complemental strand, 7713839 - 7713454
Alignment:
| Q |
25 |
gccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactgggcc |
124 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||| | | |||||||||||||||||||| |||||||||||||| |
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|
| T |
7713839 |
gccgtggctggggtctttccggtacacttccagcggagtttggcgacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactgggcc |
7713740 |
T |
|
| Q |
125 |
tattcctagctctttcagcaaactccaaagactacaaagactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttgaag |
224 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||| ||| ||||||||||| |||||||| ||||||||| | ||||| || || ||| |||||||| |
|
|
| T |
7713739 |
aatccctaactctttcagcaaactcaaaagactagaaaatctcgaccttggctccaacagccttagtgggccaatccctgaatttctgggcaagttgaag |
7713640 |
T |
|
| Q |
225 |
ggcttacaggagtttgatttgtctaacaacaagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcgcagtttaatgtcagcttta |
324 |
Q |
| |
|
|| | || ||| |||||||||| |||||||||||| |||||| ||||||||||||| ||| | ||||| ||||||||||||||| ||||| ||||||| |
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|
| T |
7713639 |
cgcctccaagaggttgatttgtccaacaacaagttatccggtgctattccggcgtcgctcgacaacctacagtctctttcgcagttcaatgttagcttta |
7713540 |
T |
|
| Q |
325 |
accaactatgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
410 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
7713539 |
accagctctgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgagcataataaatgcctttgtgatgctcct |
7713454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 23 - 410
Target Start/End: Complemental strand, 7699496 - 7699109
Alignment:
| Q |
23 |
cagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaaagtaactggg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||| || ||||||| | | |||||||||||||||||||| |||||||||||| |
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|
| T |
7699496 |
cagccgtggctggggtctttccggtacgcttccagcggagtttggcaacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactggg |
7699397 |
T |
|
| Q |
123 |
cctattcctagctctttcagcaaactccaaagactacaaagactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttga |
222 |
Q |
| |
|
|| || |||| |||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||| | |||||| | || |||||| |||||| |
|
|
| T |
7699396 |
ccaatccctaactcttttagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttga |
7699297 |
T |
|
| Q |
223 |
agggcttacaggagtttgatttgtctaacaacaagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcgcagtttaatgtcagctt |
322 |
Q |
| |
|
|| || || ||||| ||||||||||||||||||||||| |||| |||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
7699296 |
agcgcctaaaggaggttgatttgtctaacaacaagttatccggcactattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagctt |
7699197 |
T |
|
| Q |
323 |
taaccaactatgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
410 |
Q |
| |
|
|||||| || |||||||| || ||| ||||||||| |||||| |||| | |||||| |||||||||||||| |||| ||||||| |
|
|
| T |
7699196 |
taaccagctctgtggtgcaattcctgctgggttgaagaagtttaacaagaatgtgtttgagcataataaatgcctttgtggtgctcct |
7699109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 115 - 402
Target Start/End: Original strand, 12908070 - 12908357
Alignment:
| Q |
115 |
taactgggcctattcctagctctttcagcaaactccaaagactacaaagactcgaccttggttccaacagtcttagtgggtcgatccccactttcctagg |
214 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||| ||| | | | ||| ||| | ||| ||||||| |||||||| |||||||||| |||||||| |
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|
| T |
12908070 |
taactgggccaatccctaactctttcagcaaactcaaaaaattgcgaagcctcaaacttaactccaacaaccttagtggcccgatccccaccttcctagg |
12908169 |
T |
|
| Q |
215 |
ccagttgaagggcttacaggagtttgatttgtctaacaacaagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcgcagtttaat |
314 |
Q |
| |
|
|| ||||||| ||||| | ||| ||||||||||||||||||||||| ||||||||||||| |||||| ||| | ||||||||||||| || ||||| ||| |
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|
| T |
12908170 |
ccggttgaagcgcttagaagaggttgatttgtctaacaacaagttatccggtgttattccagcgtcgctcgccaccctaccgtctctctcccagttgaat |
12908269 |
T |
|
| Q |
315 |
gtcagctttaaccaactatgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgatcataataaatgcctctgtg |
402 |
Q |
| |
|
|| |||| |||||| || ||||||||||| ||||||||||||| ||||| | |||||| |||||| |||||||||||||| |||| |
|
|
| T |
12908270 |
gttagctctaaccatctgtgtggtgcgatacctactgggttgaagaagttggagaagagtatgtttgagcataataaatgcctttgtg |
12908357 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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