View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_high_49 (Length: 412)
Name: NF11538_high_49
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 52373676 - 52373291
Alignment:
| Q |
19 |
aatgtggttgaatcttttcaccattttgaagctgtatagtatcttgaattctaccagtaacaaagagatacctgttttctccttttacgattcctttgtc |
118 |
Q |
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| T |
52373676 |
aatgtggttgaatcttttcaccattttgaagctgtatagtatcttgaattctaccagtaacaaagagatacctgttttctccttttacgattcctttgtc |
52373577 |
T |
|
| Q |
119 |
acccgttcgaagaaaacacttacgaactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagggtgaccaaggtaaccagaggcattactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373576 |
acccgttcgaagaaaacacttacgaactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagggtgaccaaggtaaccagaggcattactt |
52373477 |
T |
|
| Q |
219 |
ggagatgaaacccaaatttctccttcaacaccatcttcaacagcttcaagtgtttcttcattaacaaccatgatgtccatgtcttcttgttcctcaagcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373476 |
ggagatgaaacccaaatttctccttcaacaccatcttcaacagcttcaagtgtttcttcattaacaaccatgatgtccatgtcttcttgttcctcaagcc |
52373377 |
T |
|
| Q |
319 |
ttgcaactggcaaaagctttttatgagttggaaaagtttcttcgtcatatctccatgcagttgaaacaaaggtacaattctctgct |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373376 |
ttgcaactggcaaaagctttttatgagttggaaaagtttcttcgtcatatctccatgcagttgaaacaaaggtacaattctctgct |
52373291 |
T |
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